BacMap

Definition	Psychrobacter cryohalolentis K5 chromosome, complete genome.
Accession	NC_007969
Length	3,059,876

Click here to switch to the map view.

The map label for this gene is cbiO2 [H]

Identifier: 93006425

GI number: 93006425

Start: 1961719

End: 1962513

Strand: Direct

Name: cbiO2 [H]

Synonym: Pcryo_1601

Alternate gene names: 93006425

Gene position: 1961719-1962513 (Clockwise)

Preceding gene: 93006424

Following gene: 93006426

Centisome position: 64.11

GC content: 46.79

Gene sequence:

>795_bases
ATGATGCAAGCTACAGATTTGCGGTTGACCTTTAATCCCGGAACGCCCATTGAAAACCCTGCCCTACGTGGTATCGATTT
AAATATCGCTGATGGTGAATTTGTCACTGTCATCGGTACCAATGGCGCGGGAAAATCGACCTTTTTAAACGCGGTTAGTG
GTACCACTCGCGTCGATAGTGGCTCAATCTTACTAAATGGCATTGACGTCACCAAAAAGACCGCGCACCAGCGTGCTCAT
TGGGTGGCTCGTGTATTTCAAGACCCAATGGCGGGAACTTGTGAAGCGTTAACGATTGAAGAAAACATGGCGCTTGCCTA
TAAACGCGGTGGCAAACGTGGTTTAAACTTTGCTCTAAACCAAAATAACCGTGACTTATTTCGCGAAAAATTGTCGGTCT
TAAAACTTGGCTTAGAAAATCGTTTGACTGACCGCATGGGTCTGTTATCCGGTGGTCAGCGCCAAGCCGTTAGCCTATTG
ATGGCATCACTACAGCCTTCTAAGATTCTATTACTTGATGAGCACACGGCGGCGCTTGACCCTAAGACTGCCGCTTTTGT
GTTAGAACTAACCGATAAAATTGTCACTGACAATCAGCTTACTACCATGATGGTCACGCACTCGATGCAGCAAGCGCTCG
CTCATGGCACGCGTACCGTGATGCTACATCAAGGTCAAGTGGTATTAGATGTGGCTGGTGATAAACGTCAAGGCATGACT
GTGCACGATCTACTCGATATGTTTGAGCAAACGCGCGGCGAGAAAGTTGATGATGACAGCTTAATATTAAGCTAA

Upstream 100 bases:

>100_bases
CTCGTGGTATTGGCATTGGTATTGCCGAAAGCTAAAAATAAATTCTTAAGTCGTAAAGTTCGGGCTTAATGTCAATGTGC
ACCCATAAGGAATAATAATT

Downstream 100 bases:

>100_bases
CCGATAACCCGTATTTCTTTGAATATAGATAAAAAACGCCTACTTAATCGTAGGCGTTTTTTGCTTTTAGTTTACGATAA
AAATAATATCTGATCGTTAT

Product: ABC transporter-like protein

Products: ADP; phosphate; thiamine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MMQATDLRLTFNPGTPIENPALRGIDLNIADGEFVTVIGTNGAGKSTFLNAVSGTTRVDSGSILLNGIDVTKKTAHQRAH
WVARVFQDPMAGTCEALTIEENMALAYKRGGKRGLNFALNQNNRDLFREKLSVLKLGLENRLTDRMGLLSGGQRQAVSLL
MASLQPSKILLLDEHTAALDPKTAAFVLELTDKIVTDNQLTTMMVTHSMQQALAHGTRTVMLHQGQVVLDVAGDKRQGMT
VHDLLDMFEQTRGEKVDDDSLILS

Sequences:

>Translated_264_residues
MMQATDLRLTFNPGTPIENPALRGIDLNIADGEFVTVIGTNGAGKSTFLNAVSGTTRVDSGSILLNGIDVTKKTAHQRAH
WVARVFQDPMAGTCEALTIEENMALAYKRGGKRGLNFALNQNNRDLFREKLSVLKLGLENRLTDRMGLLSGGQRQAVSLL
MASLQPSKILLLDEHTAALDPKTAAFVLELTDKIVTDNQLTTMMVTHSMQQALAHGTRTVMLHQGQVVLDVAGDKRQGMT
VHDLLDMFEQTRGEKVDDDSLILS
>Mature_264_residues
MMQATDLRLTFNPGTPIENPALRGIDLNIADGEFVTVIGTNGAGKSTFLNAVSGTTRVDSGSILLNGIDVTKKTAHQRAH
WVARVFQDPMAGTCEALTIEENMALAYKRGGKRGLNFALNQNNRDLFREKLSVLKLGLENRLTDRMGLLSGGQRQAVSLL
MASLQPSKILLLDEHTAALDPKTAAFVLELTDKIVTDNQLTTMMVTHSMQQALAHGTRTVMLHQGQVVLDVAGDKRQGMT
VHDLLDMFEQTRGEKVDDDSLILS

Specific function: Part of the ABC transporter complex CbiONQ involved in cobalt import. Responsible for energy coupling to the transport system [H]

COG id: COG1101

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI148612844, Length=225, Percent_Identity=32, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI255708477, Length=225, Percent_Identity=32, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI9961250, Length=237, Percent_Identity=29.957805907173, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI116734710, Length=217, Percent_Identity=26.2672811059908, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI150417984, Length=222, Percent_Identity=28.8288288288288, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI42741659, Length=252, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI9961252, Length=230, Percent_Identity=28.695652173913, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4505771, Length=230, Percent_Identity=28.695652173913, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4557481, Length=218, Percent_Identity=28.4403669724771, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI27262624, Length=217, Percent_Identity=30.4147465437788, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI27262626, Length=217, Percent_Identity=30.4147465437788, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI105990541, Length=219, Percent_Identity=25.5707762557078, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27881501, Length=205, Percent_Identity=24.8780487804878, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI30795238, Length=205, Percent_Identity=24.8780487804878, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI171184400, Length=217, Percent_Identity=27.1889400921659, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI157502201, Length=211, Percent_Identity=27.9620853080569, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI25914749, Length=225, Percent_Identity=28.8888888888889, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=32.8703703703704, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=32.7014218009479, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082268, Length=224, Percent_Identity=31.6964285714286, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790544, Length=243, Percent_Identity=30.0411522633745, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI87082267, Length=205, Percent_Identity=32.1951219512195, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787164, Length=237, Percent_Identity=29.957805907173, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787105, Length=233, Percent_Identity=30.0429184549356, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787370, Length=206, Percent_Identity=31.0679611650485, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87081709, Length=211, Percent_Identity=27.9620853080569, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081791, Length=222, Percent_Identity=28.8288288288288, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789032, Length=208, Percent_Identity=29.3269230769231, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786563, Length=207, Percent_Identity=30.4347826086957, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786398, Length=214, Percent_Identity=28.9719626168224, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788761, Length=208, Percent_Identity=29.8076923076923, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790162, Length=220, Percent_Identity=30.4545454545455, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=26.4840182648402, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787712, Length=212, Percent_Identity=30.6603773584906, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787758, Length=225, Percent_Identity=28.8888888888889, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=30.2325581395349, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786345, Length=210, Percent_Identity=31.4285714285714, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787143, Length=235, Percent_Identity=28.5106382978723, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081834, Length=217, Percent_Identity=26.2672811059908, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786698, Length=208, Percent_Identity=27.8846153846154, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787792, Length=213, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786872, Length=201, Percent_Identity=33.8308457711443, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787500, Length=214, Percent_Identity=27.5700934579439, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786803, Length=257, Percent_Identity=26.0700389105058, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788450, Length=211, Percent_Identity=28.436018957346, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789963, Length=227, Percent_Identity=26.8722466960352, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790467, Length=211, Percent_Identity=30.3317535545024, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788506, Length=222, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787113, Length=251, Percent_Identity=28.6852589641434, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789864, Length=217, Percent_Identity=29.0322580645161, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790190, Length=213, Percent_Identity=24.8826291079812, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786319, Length=214, Percent_Identity=26.1682242990654, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994883, Length=241, Percent_Identity=25.3112033195021, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=31.9047619047619, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790739, Length=208, Percent_Identity=27.8846153846154, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786981, Length=200, Percent_Identity=32, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081782, Length=222, Percent_Identity=25.6756756756757, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1787112, Length=208, Percent_Identity=28.3653846153846, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=26.8867924528302, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786653, Length=212, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI145693107, Length=225, Percent_Identity=25.7777777777778, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=251, Percent_Identity=31.4741035856574, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI212646699, Length=233, Percent_Identity=27.0386266094421, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71996809, Length=207, Percent_Identity=26.5700483091787, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI193211015, Length=207, Percent_Identity=26.5700483091787, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI193211017, Length=207, Percent_Identity=26.5700483091787, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17567269, Length=183, Percent_Identity=32.2404371584699, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71984940, Length=209, Percent_Identity=30.622009569378, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17543740, Length=225, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=218, Percent_Identity=26.1467889908257, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193209708, Length=211, Percent_Identity=27.0142180094787, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=183, Percent_Identity=31.1475409836066, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=183, Percent_Identity=30.0546448087432, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534520, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=206, Percent_Identity=27.1844660194175, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17510237, Length=218, Percent_Identity=26.1467889908257, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=207, Percent_Identity=25.6038647342995, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=211, Percent_Identity=26.0663507109005, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=25.7918552036199, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=207, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17533971, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=226, Percent_Identity=27.8761061946903, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=221, Percent_Identity=24.4343891402715, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=220, Percent_Identity=29.5454545454545, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71988343, Length=215, Percent_Identity=27.4418604651163, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6320339, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24659289, Length=207, Percent_Identity=30.4347826086957, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17136662, Length=212, Percent_Identity=28.3018867924528, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85726357, Length=234, Percent_Identity=26.4957264957265, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=26.046511627907, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24649703, Length=243, Percent_Identity=30.4526748971193, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641565, Length=209, Percent_Identity=28.7081339712919, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24650986, Length=231, Percent_Identity=29.004329004329, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21358185, Length=231, Percent_Identity=29.004329004329, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24585557, Length=228, Percent_Identity=25.8771929824561, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45552437, Length=228, Percent_Identity=25.8771929824561, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281363262, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24653245, Length=209, Percent_Identity=26.7942583732057, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015856
- InterPro:   IPR003593
- InterPro:   IPR022112 [H]

Pfam domain/function: PF00005 ABC_tran; PF12370 CoABC_C [H]

EC number: NA

Molecular weight: Translated: 28811; Mature: 28811

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMQATDLRLTFNPGTPIENPALRGIDLNIADGEFVTVIGTNGAGKSTFLNAVSGTTRVDS
CCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCEECC
GSILLNGIDVTKKTAHQRAHWVARVFQDPMAGTCEALTIEENMALAYKRGGKRGLNFALN
CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEECCCCCCCCEEEEC
QNNRDLFREKLSVLKLGLENRLTDRMGLLSGGQRQAVSLLMASLQPSKILLLDEHTAALD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
PKTAAFVLELTDKIVTDNQLTTMMVTHSMQQALAHGTRTVMLHQGQVVLDVAGDKRQGMT
CCHHEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCC
VHDLLDMFEQTRGEKVDDDSLILS
HHHHHHHHHHHCCCCCCCCCEEEC
>Mature Secondary Structure
MMQATDLRLTFNPGTPIENPALRGIDLNIADGEFVTVIGTNGAGKSTFLNAVSGTTRVDS
CCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHCCCCCEECC
GSILLNGIDVTKKTAHQRAHWVARVFQDPMAGTCEALTIEENMALAYKRGGKRGLNFALN
CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEEEECCCCCCCCEEEEC
QNNRDLFREKLSVLKLGLENRLTDRMGLLSGGQRQAVSLLMASLQPSKILLLDEHTAALD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCC
PKTAAFVLELTDKIVTDNQLTTMMVTHSMQQALAHGTRTVMLHQGQVVLDVAGDKRQGMT
CCHHEEEEEHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCC
VHDLLDMFEQTRGEKVDDDSLILS
HHHHHHHHHHHCCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; thiamine [Periplasm]; H2O [C]

Specific reaction: ATP + thiamine [Periplasm] + H2O = ADP + phosphate + thiamine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA