Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
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Accession | NC_007969 |
Length | 3,059,876 |
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The map label for this gene is uup-A [H]
Identifier: 93006406
GI number: 93006406
Start: 1940267
End: 1942213
Strand: Direct
Name: uup-A [H]
Synonym: Pcryo_1582
Alternate gene names: 93006406
Gene position: 1940267-1942213 (Clockwise)
Preceding gene: 93006400
Following gene: 93006407
Centisome position: 63.41
GC content: 45.1
Gene sequence:
>1947_bases ATGGCACTGATACATTTAAAAGATATTCACTTAGCCTTTGGCGTCGCTCCTGTCCTTGATGGTATTGACTTTGCTATCGA TTCAGGCGAGCGCGTGTGCTTAATTGGTCGCAATGGCGAAGGCAAATCCACCTTATTTAAACTGATTAATGGCACATTGT TGCCTGATAGCGGCGAAGTTATTATTAATAATAGTGTACGCGTCGCTATGCTCGAGCAGGATGTACCTGAAACCAGCGGT AGAATTTTAGATATCGTTATGGGTGGCAGCAAACGCACTGCCGAGCTGCTGATTAACTATAATGCGCAAACTGATTTGTG TGCCAATGGTGACATGGATGCCTGCGAGCGTATGGCAGACTTGCAGCATGATATCGATGCGGTACATGGTTGGGATTTAG AGCGCGAAGCAACACGTCTTATCACGACAATGGGTCTCGATCCAGACGATGACTTATCGTCACTATCTGGTGGTCGTAAG CGCCGTGTTTTATTAGCACGCTCGTTAGTGACTAAACCTGACGTATTGCTTCTCGATGAACCGACCAACCATTTGGACGT TGATAGCATTGAGTGGCTTGAGCGCTTTTTATTAGATTGGCAAGGTCTGACATTATTGTTCGTTACCCATGATAGAGCAT TCGTGAATAAATTATCGACTCGTATCATTGAGCTTGATCGCGGTCAATTGACCAGCTATGACGTCACTCAAGGTGAAGGT GGCTATGCACGCTACCAAGAATTAAAAGAGCTACAGTTACTAGCTGAAGAGAAGAATAATGCCAACTTTGATAAAAAATT GGCACAAGAAGAAGTTTGGATTCGCCAAGGTATCAAAGCACGCCGTACCCGTAACGAAGGTCGTGTGCGTGAGCTAAAAG CGTTGCGTGAAGAGCGTAGCGACCGCCGTGAGCAAGTCGGTAATGTCAATATTACCATGGGTCAAGGCGAGAAAAGCGGC AAGCTGGTCTGCAAGGTTAAAAACCTACATCTACAATATGATGATCATGTATTGGTCGATAACTTTAGCACTACCATCAT GCGCGGTGACAAAATCGGTATCGTCGGTCCGAATGGTGCAGGTAAAACCACGCTTATTAAAGCCCTACTCGATATGTCAG ACGATGATGTGATCAAAACAGGCAGCGTTGAATTAGGTACTAACTTAAAAATTGCTTTCTTTGACCAGCTGCGTGATCAG TTAGATTTGGAAGCCAGTGTGGCGCAAAACGTCTCAGAAGGCTCTGACTTCGTCGAAGTCGGCGGTCGTAAAACGCACAT TATGAGCTATCTACAAGATTTCTTATTTGCGCCAGAGCGTGCCCGTACGCCCGTCAAAGCATTATCAGGTGGTGAGCGTA ACCGCGTGCTACTAGCTAAGCAATTATTAAAACCTGCAAATATCCTCGTACTCGATGAGCCAACCAACGACTTGGATATG GCGACACTTGAGCTACTAGAAGAATCCGTCGCCAGCTTTGGTGGTACGATTTTGCTCATTAGCCATGATCGCTCATTTAT GGACAATGTCGTCACTTCCACTTGGGTATTTGATACTGATGAAGATGGTAAAGGCACCGTCAGCGAGTATGTCGGCGGCT ATCAAGAGTATTTGGTACAAAAAAACCGCGAAGAAGCTTCTAAAGCAGCTAAATCTTCTAGTAGTAATACTACTGCCAAC AGCAAATCTGTTAATAAATCAGCGGCAGTAGCGAAACCTAATACTGCTGCTAAAAAGCTTAATTTCAATGACCAGCGTGA GCTTGATGCGTTACCAAAAGAGATCGCTGCTTTAGAAGCGGAACAAACGCAGCTAGAAGAAAAGCTAGCCGACGGTACTT GGTTTAATCAAGATTTTGATGCGGCAACAGCTGCTAGTGAGCGACTGCTTGCCATTGAAGATGAGATGATGATTAAGCTT GAACGCTGGAATACGCTTGAGAGCTAA
Upstream 100 bases:
>100_bases AAATCTATTTACGCACGCTACAGTTACGTGGCAGCATGTTATACTGCTGCAAATTTTGCAACAACCCCTACCTCACTATT ATATAAGCTTAAGATACTCT
Downstream 100 bases:
>100_bases TCTAAGTCTTTGTGCATGTAATTATCATCACTTTATAATATAAAGTGGTGATAATAGCGTCACAGCGACTTACAAAGTAG TGATGTGCTGAAAGTTAGTG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 648; Mature: 647
Protein sequence:
>648_residues MALIHLKDIHLAFGVAPVLDGIDFAIDSGERVCLIGRNGEGKSTLFKLINGTLLPDSGEVIINNSVRVAMLEQDVPETSG RILDIVMGGSKRTAELLINYNAQTDLCANGDMDACERMADLQHDIDAVHGWDLEREATRLITTMGLDPDDDLSSLSGGRK RRVLLARSLVTKPDVLLLDEPTNHLDVDSIEWLERFLLDWQGLTLLFVTHDRAFVNKLSTRIIELDRGQLTSYDVTQGEG GYARYQELKELQLLAEEKNNANFDKKLAQEEVWIRQGIKARRTRNEGRVRELKALREERSDRREQVGNVNITMGQGEKSG KLVCKVKNLHLQYDDHVLVDNFSTTIMRGDKIGIVGPNGAGKTTLIKALLDMSDDDVIKTGSVELGTNLKIAFFDQLRDQ LDLEASVAQNVSEGSDFVEVGGRKTHIMSYLQDFLFAPERARTPVKALSGGERNRVLLAKQLLKPANILVLDEPTNDLDM ATLELLEESVASFGGTILLISHDRSFMDNVVTSTWVFDTDEDGKGTVSEYVGGYQEYLVQKNREEASKAAKSSSSNTTAN SKSVNKSAAVAKPNTAAKKLNFNDQRELDALPKEIAALEAEQTQLEEKLADGTWFNQDFDAATAASERLLAIEDEMMIKL ERWNTLES
Sequences:
>Translated_648_residues MALIHLKDIHLAFGVAPVLDGIDFAIDSGERVCLIGRNGEGKSTLFKLINGTLLPDSGEVIINNSVRVAMLEQDVPETSG RILDIVMGGSKRTAELLINYNAQTDLCANGDMDACERMADLQHDIDAVHGWDLEREATRLITTMGLDPDDDLSSLSGGRK RRVLLARSLVTKPDVLLLDEPTNHLDVDSIEWLERFLLDWQGLTLLFVTHDRAFVNKLSTRIIELDRGQLTSYDVTQGEG GYARYQELKELQLLAEEKNNANFDKKLAQEEVWIRQGIKARRTRNEGRVRELKALREERSDRREQVGNVNITMGQGEKSG KLVCKVKNLHLQYDDHVLVDNFSTTIMRGDKIGIVGPNGAGKTTLIKALLDMSDDDVIKTGSVELGTNLKIAFFDQLRDQ LDLEASVAQNVSEGSDFVEVGGRKTHIMSYLQDFLFAPERARTPVKALSGGERNRVLLAKQLLKPANILVLDEPTNDLDM ATLELLEESVASFGGTILLISHDRSFMDNVVTSTWVFDTDEDGKGTVSEYVGGYQEYLVQKNREEASKAAKSSSSNTTAN SKSVNKSAAVAKPNTAAKKLNFNDQRELDALPKEIAALEAEQTQLEEKLADGTWFNQDFDAATAASERLLAIEDEMMIKL ERWNTLES >Mature_647_residues ALIHLKDIHLAFGVAPVLDGIDFAIDSGERVCLIGRNGEGKSTLFKLINGTLLPDSGEVIINNSVRVAMLEQDVPETSGR ILDIVMGGSKRTAELLINYNAQTDLCANGDMDACERMADLQHDIDAVHGWDLEREATRLITTMGLDPDDDLSSLSGGRKR RVLLARSLVTKPDVLLLDEPTNHLDVDSIEWLERFLLDWQGLTLLFVTHDRAFVNKLSTRIIELDRGQLTSYDVTQGEGG YARYQELKELQLLAEEKNNANFDKKLAQEEVWIRQGIKARRTRNEGRVRELKALREERSDRREQVGNVNITMGQGEKSGK LVCKVKNLHLQYDDHVLVDNFSTTIMRGDKIGIVGPNGAGKTTLIKALLDMSDDDVIKTGSVELGTNLKIAFFDQLRDQL DLEASVAQNVSEGSDFVEVGGRKTHIMSYLQDFLFAPERARTPVKALSGGERNRVLLAKQLLKPANILVLDEPTNDLDMA TLELLEESVASFGGTILLISHDRSFMDNVVTSTWVFDTDEDGKGTVSEYVGGYQEYLVQKNREEASKAAKSSSSNTTANS KSVNKSAAVAKPNTAAKKLNFNDQRELDALPKEIAALEAEQTQLEEKLADGTWFNQDFDAATAASERLLAIEDEMMIKLE RWNTLES
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=546, Percent_Identity=29.4871794871795, Blast_Score=202, Evalue=8e-52, Organism=Homo sapiens, GI10947137, Length=578, Percent_Identity=27.3356401384083, Blast_Score=182, Evalue=9e-46, Organism=Homo sapiens, GI27881506, Length=566, Percent_Identity=27.5618374558304, Blast_Score=181, Evalue=2e-45, Organism=Homo sapiens, GI10947135, Length=537, Percent_Identity=27.9329608938547, Blast_Score=173, Evalue=4e-43, Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=27.9329608938547, Blast_Score=173, Evalue=6e-43, Organism=Homo sapiens, GI171184400, Length=253, Percent_Identity=28.4584980237154, Blast_Score=77, Evalue=6e-14, Organism=Homo sapiens, GI9955963, Length=206, Percent_Identity=29.126213592233, Blast_Score=75, Evalue=3e-13, Organism=Homo sapiens, GI27881501, Length=232, Percent_Identity=26.2931034482759, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI30795238, Length=232, Percent_Identity=26.2931034482759, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI4505771, Length=189, Percent_Identity=25.9259259259259, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=189, Percent_Identity=25.9259259259259, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=189, Percent_Identity=25.9259259259259, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI1787182, Length=655, Percent_Identity=45.3435114503817, Blast_Score=520, Evalue=1e-148, Organism=Escherichia coli, GI2367384, Length=548, Percent_Identity=35.7664233576642, Blast_Score=296, Evalue=3e-81, Organism=Escherichia coli, GI1787041, Length=555, Percent_Identity=30.6306306306306, Blast_Score=234, Evalue=1e-62, Organism=Escherichia coli, GI1789751, Length=640, Percent_Identity=26.5625, Blast_Score=228, Evalue=7e-61, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=29.6137339055794, Blast_Score=92, Evalue=1e-19, Organism=Escherichia coli, GI48995001, Length=510, Percent_Identity=24.5098039215686, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1786398, Length=221, Percent_Identity=26.6968325791855, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1787712, Length=236, Percent_Identity=27.5423728813559, Blast_Score=76, Evalue=7e-15, Organism=Escherichia coli, GI1788897, Length=222, Percent_Identity=25.6756756756757, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1790525, Length=561, Percent_Identity=21.3903743315508, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI87081782, Length=236, Percent_Identity=29.2372881355932, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1787547, Length=227, Percent_Identity=26.431718061674, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=184, Percent_Identity=29.3478260869565, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787089, Length=243, Percent_Identity=27.9835390946502, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1786872, Length=236, Percent_Identity=27.9661016949153, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=29.3577981651376, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI145693107, Length=223, Percent_Identity=26.0089686098655, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788506, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=25.3456221198157, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1787758, Length=195, Percent_Identity=29.2307692307692, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786253, Length=226, Percent_Identity=30.9734513274336, Blast_Score=63, Evalue=5e-11, Organism=Escherichia coli, GI1787105, Length=242, Percent_Identity=30.1652892561983, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17553372, Length=552, Percent_Identity=30.2536231884058, Blast_Score=185, Evalue=6e-47, Organism=Caenorhabditis elegans, GI17559834, Length=542, Percent_Identity=26.7527675276753, Blast_Score=184, Evalue=1e-46, Organism=Caenorhabditis elegans, GI17555318, Length=512, Percent_Identity=27.9296875, Blast_Score=175, Evalue=8e-44, Organism=Caenorhabditis elegans, GI17542146, Length=260, Percent_Identity=27.3076923076923, Blast_Score=72, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17533971, Length=186, Percent_Identity=30.6451612903226, Blast_Score=70, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17569145, Length=208, Percent_Identity=25.9615384615385, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=574, Percent_Identity=27.0034843205575, Blast_Score=168, Evalue=3e-42, Organism=Saccharomyces cerevisiae, GI6320874, Length=555, Percent_Identity=26.1261261261261, Blast_Score=160, Evalue=5e-40, Organism=Saccharomyces cerevisiae, GI6325030, Length=393, Percent_Identity=29.2620865139949, Blast_Score=115, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6324314, Length=396, Percent_Identity=26.010101010101, Blast_Score=100, Evalue=5e-22, Organism=Saccharomyces cerevisiae, GI6323278, Length=398, Percent_Identity=24.6231155778894, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI24642252, Length=563, Percent_Identity=28.2415630550622, Blast_Score=197, Evalue=3e-50, Organism=Drosophila melanogaster, GI18859989, Length=563, Percent_Identity=28.2415630550622, Blast_Score=197, Evalue=3e-50, Organism=Drosophila melanogaster, GI24666836, Length=549, Percent_Identity=29.6903460837887, Blast_Score=196, Evalue=5e-50, Organism=Drosophila melanogaster, GI24641342, Length=550, Percent_Identity=26.7272727272727, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI281363262, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24653245, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 71955; Mature: 71824
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALIHLKDIHLAFGVAPVLDGIDFAIDSGERVCLIGRNGEGKSTLFKLINGTLLPDSGEV CEEEEEEHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCE IINNSVRVAMLEQDVPETSGRILDIVMGGSKRTAELLINYNAQTDLCANGDMDACERMAD EEECCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCEECCCCHHHHHHHHH LQHDIDAVHGWDLEREATRLITTMGLDPDDDLSSLSGGRKRRVLLARSLVTKPDVLLLDE HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCEEEEEC PTNHLDVDSIEWLERFLLDWQGLTLLFVTHDRAFVNKLSTRIIELDRGQLTSYDVTQGEG CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEECCCCCCEEECCCCCC GYARYQELKELQLLAEEKNNANFDKKLAQEEVWIRQGIKARRTRNEGRVRELKALREERS CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH DRREQVGNVNITMGQGEKSGKLVCKVKNLHLQYDDHVLVDNFSTTIMRGDKIGIVGPNGA HHHHHHCCEEEEECCCCCCCCEEEEEEEEEEEECCEEEEECCCEEEEECCEEEEECCCCC GKTTLIKALLDMSDDDVIKTGSVELGTNLKIAFFDQLRDQLDLEASVAQNVSEGSDFVEV CHHHHHHHHHCCCCCCEEECCCEEECCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCHHHC GGRKTHIMSYLQDFLFAPERARTPVKALSGGERNRVLLAKQLLKPANILVLDEPTNDLDM CCCHHHHHHHHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHH ATLELLEESVASFGGTILLISHDRSFMDNVVTSTWVFDTDEDGKGTVSEYVGGYQEYLVQ HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEEECCCCCCCCHHHHHCCHHHHHHH KNREEASKAAKSSSSNTTANSKSVNKSAAVAKPNTAAKKLNFNDQRELDALPKEIAALEA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH EQTQLEEKLADGTWFNQDFDAATAASERLLAIEDEMMIKLERWNTLES HHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEECCCCEEEEECCCCCCC >Mature Secondary Structure ALIHLKDIHLAFGVAPVLDGIDFAIDSGERVCLIGRNGEGKSTLFKLINGTLLPDSGEV EEEEEEHHHHHHHHHHHHCCCCEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCE IINNSVRVAMLEQDVPETSGRILDIVMGGSKRTAELLINYNAQTDLCANGDMDACERMAD EEECCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCEECCCCHHHHHHHHH LQHDIDAVHGWDLEREATRLITTMGLDPDDDLSSLSGGRKRRVLLARSLVTKPDVLLLDE HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCEEEEEC PTNHLDVDSIEWLERFLLDWQGLTLLFVTHDRAFVNKLSTRIIELDRGQLTSYDVTQGEG CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHEEECCCCCCEEECCCCCC GYARYQELKELQLLAEEKNNANFDKKLAQEEVWIRQGIKARRTRNEGRVRELKALREERS CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH DRREQVGNVNITMGQGEKSGKLVCKVKNLHLQYDDHVLVDNFSTTIMRGDKIGIVGPNGA HHHHHHCCEEEEECCCCCCCCEEEEEEEEEEEECCEEEEECCCEEEEECCEEEEECCCCC GKTTLIKALLDMSDDDVIKTGSVELGTNLKIAFFDQLRDQLDLEASVAQNVSEGSDFVEV CHHHHHHHHHCCCCCCEEECCCEEECCCEEEEEHHHHHHHHCCHHHHHHHHHCCCCHHHC GGRKTHIMSYLQDFLFAPERARTPVKALSGGERNRVLLAKQLLKPANILVLDEPTNDLDM CCCHHHHHHHHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHH ATLELLEESVASFGGTILLISHDRSFMDNVVTSTWVFDTDEDGKGTVSEYVGGYQEYLVQ HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHEEEEECCCCCCCCHHHHHCCHHHHHHH KNREEASKAAKSSSSNTTANSKSVNKSAAVAKPNTAAKKLNFNDQRELDALPKEIAALEA CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHH EQTQLEEKLADGTWFNQDFDAATAASERLLAIEDEMMIKLERWNTLES HHHHHHHHHCCCCCCCCCCCHHHHHCCCEEEECCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Endonuclease; Excision [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]