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The map label for this gene is rbcR [H]

Identifier: 93006399

GI number: 93006399

Start: 1931850

End: 1932686

Strand: Direct

Name: rbcR [H]

Synonym: Pcryo_1575

Alternate gene names: 93006399

Gene position: 1931850-1932686 (Clockwise)

Preceding gene: 93006393

Following gene: 93006400

Centisome position: 63.13

GC content: 42.53

Gene sequence:

>837_bases
ATGAATACAGGTAGTATTTCGGGTGCAGCAGAAAAGCTTTTTATTACTCAGCCTGCGGTCAGTAAACGCATCAAAAACTT
AGAAGATGAGTTTAATATCACTTTATTTGATACGGTGGGTCGTGGTATTGTTCCAACTCAAGCAGCCAGTGAGATGTTAC
CTCATGCCAAACGATGGCTTGAAGACTACGAAAACTTTAAAATCAATCTACAGCACTCTAAGCATATTGTATCCGGCAAA
CTTGTCATTGGTACTAGCCATCATATAGGCTTACACCATCTCGCCCCTGTTCTTAAGCATTTTATCCAAGCGTATCCTGC
CGTACAGCTAGAGGTACATTTCGTCGATTCAGAAACCGCACATAAAGCGGTACTTGATGGTGACTTGTCTCTAGCATTTT
TGACCCTGCCACCCGTTTATGACAAGCGTTTAACCTATCATACCCTGTGGTCAGATCCACTTTACTTTATGACTGGTACC
TTATCACCTTTGGCCAGTAAGTCTAATGTGACACTAGAGCAATTGGCACGTTACCCTGCTATCTTGCCATCTGCCAATAC
CTTTACCAGTCAAATTACCTTGGCTGAATTTGCCAAACACAATCTAAAGCCTTATGCCACCATGAGCACCAACCCACTTG
AATCTATTCGGATGCTGGTGTCTGTAGGACTTGGTTGGTCAGTATTGCCGCAAACGATGATTAGCCAAGACTTAGAGCGT
ATTGATATGGCAGATAATATCGAATTACAGCGTCATTTAGGCGTGGTAATCAACCCGAAACTGACCCAATCAAACAGTGT
AACTGCACTATTAGATTTGCTAGCACCCATTGAATAA

Upstream 100 bases:

>100_bases
AATACATTATGATTGGGTCAGCCAACTTTTATTTATAGCTCGTTATGTAGCTAAGGACATCGGTGTGAATACCACAAATT
TGACGACATTCGTGACTGTG

Downstream 100 bases:

>100_bases
GGTGCTATTGAATAACAGATCATTCAATAAAAACTCCTAGTCTGGTGTGGTTGGATAGCTAAGATAAAATAACTTTCTAA
AATATTACTTGCTGAAAGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNTGSISGAAEKLFITQPAVSKRIKNLEDEFNITLFDTVGRGIVPTQAASEMLPHAKRWLEDYENFKINLQHSKHIVSGK
LVIGTSHHIGLHHLAPVLKHFIQAYPAVQLEVHFVDSETAHKAVLDGDLSLAFLTLPPVYDKRLTYHTLWSDPLYFMTGT
LSPLASKSNVTLEQLARYPAILPSANTFTSQITLAEFAKHNLKPYATMSTNPLESIRMLVSVGLGWSVLPQTMISQDLER
IDMADNIELQRHLGVVINPKLTQSNSVTALLDLLAPIE

Sequences:

>Translated_278_residues
MNTGSISGAAEKLFITQPAVSKRIKNLEDEFNITLFDTVGRGIVPTQAASEMLPHAKRWLEDYENFKINLQHSKHIVSGK
LVIGTSHHIGLHHLAPVLKHFIQAYPAVQLEVHFVDSETAHKAVLDGDLSLAFLTLPPVYDKRLTYHTLWSDPLYFMTGT
LSPLASKSNVTLEQLARYPAILPSANTFTSQITLAEFAKHNLKPYATMSTNPLESIRMLVSVGLGWSVLPQTMISQDLER
IDMADNIELQRHLGVVINPKLTQSNSVTALLDLLAPIE
>Mature_278_residues
MNTGSISGAAEKLFITQPAVSKRIKNLEDEFNITLFDTVGRGIVPTQAASEMLPHAKRWLEDYENFKINLQHSKHIVSGK
LVIGTSHHIGLHHLAPVLKHFIQAYPAVQLEVHFVDSETAHKAVLDGDLSLAFLTLPPVYDKRLTYHTLWSDPLYFMTGT
LSPLASKSNVTLEQLARYPAILPSANTFTSQITLAEFAKHNLKPYATMSTNPLESIRMLVSVGLGWSVLPQTMISQDLER
IDMADNIELQRHLGVVINPKLTQSNSVTALLDLLAPIE

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788481, Length=239, Percent_Identity=28.4518828451883, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=233, Percent_Identity=24.4635193133047, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787879, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI145693105, Length=228, Percent_Identity=22.3684210526316, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=234, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788297, Length=237, Percent_Identity=25.3164556962025, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=242, Percent_Identity=26.0330578512397, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788748, Length=227, Percent_Identity=22.9074889867841, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788296, Length=223, Percent_Identity=26.457399103139, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30866; Mature: 30866

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTGSISGAAEKLFITQPAVSKRIKNLEDEFNITLFDTVGRGIVPTQAASEMLPHAKRWL
CCCCCCCCCHHEEEEECHHHHHHHHCCHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
EDYENFKINLQHSKHIVSGKLVIGTSHHIGLHHLAPVLKHFIQAYPAVQLEVHFVDSETA
HHHCCEEEEEEECCEEEECEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCH
HKAVLDGDLSLAFLTLPPVYDKRLTYHTLWSDPLYFMTGTLSPLASKSNVTLEQLARYPA
HHHEECCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHCCC
ILPSANTFTSQITLAEFAKHNLKPYATMSTNPLESIRMLVSVGLGWSVLPQTMISQDLER
CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IDMADNIELQRHLGVVINPKLTQSNSVTALLDLLAPIE
CCCCCCCCHHHHCCEEECCCCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MNTGSISGAAEKLFITQPAVSKRIKNLEDEFNITLFDTVGRGIVPTQAASEMLPHAKRWL
CCCCCCCCCHHEEEEECHHHHHHHHCCHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
EDYENFKINLQHSKHIVSGKLVIGTSHHIGLHHLAPVLKHFIQAYPAVQLEVHFVDSETA
HHHCCEEEEEEECCEEEECEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCH
HKAVLDGDLSLAFLTLPPVYDKRLTYHTLWSDPLYFMTGTLSPLASKSNVTLEQLARYPA
HHHEECCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHCCC
ILPSANTFTSQITLAEFAKHNLKPYATMSTNPLESIRMLVSVGLGWSVLPQTMISQDLER
CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
IDMADNIELQRHLGVVINPKLTQSNSVTALLDLLAPIE
CCCCCCCCHHHHCCEEECCCCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]