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The map label for this gene is lytT [H]

Identifier: 93005595

GI number: 93005595

Start: 901260

End: 902003

Strand: Direct

Name: lytT [H]

Synonym: Pcryo_0765

Alternate gene names: 93005595

Gene position: 901260-902003 (Clockwise)

Preceding gene: 93005594

Following gene: 93005608

Centisome position: 29.45

GC content: 34.95

Gene sequence:

>744_bases
ATGAATGTTTATGTTGTTGAAGACGAAGTGTTAGCTAGACAAGAGTTGATTTATCTTTTGAAAGACACAGGAAAAATTAA
CGTAGTTGGTGAAGCAGATGACATACATCAAGCTTTATGGGATATTAATGAAAAGCAGCCAGACGCAGTGTTCTTAGATA
TAGAGCTTGAAGGTGGCAATGGTCTTGAGCTGGCCAAGCAGTTTAGTAATATGAAGAAACCGCCTATGGTTGTGTTCGTC
ACTGCTTATGATGAATATGCGTTGAACGCTTTTAAATTAGATGCGATAGATTACATAGTCAAACCAATTGATAGAGGCAG
GCTGATAAAAGCAGTAGAGAAATTAATAAAATTGGGTAGCGTGCCGAATTCAGAAAATCTCGTTAAACCTCTGCCTTTAC
CTTCAACCCATAATGACAAAAAGCATAGTATTACTGTAAAGCAAGCAGATCGAATCATAATTATTAATACTAAAGATATT
TTATATATCGGTACTGAGAATCGGCAAGCTTATATTCAAACATTAGAGAAAAAATACCCAACAGATACTTTGCTTTATAA
GATGATGGATAAGCTCGGAGATAATTTTATTCAAGTACATAGAGGTTATATTGTAAATACCAAACAGATAGCGGCCTTAG
AACCTTGGTTCAATCGAACCTATTTGATTATATTAAAAGATGGTTCTAAAATTGCAGTAAGTCGCTCTTATGTCAAAGCA
GTCAAACAAGTGCTTGGATTGTAA

Upstream 100 bases:

>100_bases
ACTGTACAGCCAAGATGTACGCTTTAATATAGACAGTGATGTTGGCAAAGGGACTTGTGTGTCGATTATATTGCCGGTTA
AAACTTAGGGAAGGGTTTGG

Downstream 100 bases:

>100_bases
TCCTTAAATATAAATAAGAGGGGTAGATATCATAAACATCTACCCCTCTTATTTGTAAATAATACTATTTGATTATCAGT
TACGACCACCCAATCAGTTG

Product: LytR/AlgR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNVYVVEDEVLARQELIYLLKDTGKINVVGEADDIHQALWDINEKQPDAVFLDIELEGGNGLELAKQFSNMKKPPMVVFV
TAYDEYALNAFKLDAIDYIVKPIDRGRLIKAVEKLIKLGSVPNSENLVKPLPLPSTHNDKKHSITVKQADRIIIINTKDI
LYIGTENRQAYIQTLEKKYPTDTLLYKMMDKLGDNFIQVHRGYIVNTKQIAALEPWFNRTYLIILKDGSKIAVSRSYVKA
VKQVLGL

Sequences:

>Translated_247_residues
MNVYVVEDEVLARQELIYLLKDTGKINVVGEADDIHQALWDINEKQPDAVFLDIELEGGNGLELAKQFSNMKKPPMVVFV
TAYDEYALNAFKLDAIDYIVKPIDRGRLIKAVEKLIKLGSVPNSENLVKPLPLPSTHNDKKHSITVKQADRIIIINTKDI
LYIGTENRQAYIQTLEKKYPTDTLLYKMMDKLGDNFIQVHRGYIVNTKQIAALEPWFNRTYLIILKDGSKIAVSRSYVKA
VKQVLGL
>Mature_247_residues
MNVYVVEDEVLARQELIYLLKDTGKINVVGEADDIHQALWDINEKQPDAVFLDIELEGGNGLELAKQFSNMKKPPMVVFV
TAYDEYALNAFKLDAIDYIVKPIDRGRLIKAVEKLIKLGSVPNSENLVKPLPLPSTHNDKKHSITVKQADRIIIINTKDI
LYIGTENRQAYIQTLEKKYPTDTLLYKMMDKLGDNFIQVHRGYIVNTKQIAALEPWFNRTYLIILKDGSKIAVSRSYVKA
VKQVLGL

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=249, Percent_Identity=34.136546184739, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87082052, Length=253, Percent_Identity=29.6442687747036, Blast_Score=123, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28103; Mature: 28103

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVYVVEDEVLARQELIYLLKDTGKINVVGEADDIHQALWDINEKQPDAVFLDIELEGGN
CEEEEECHHHHHHHHHHHEEECCCEEEEEECHHHHHHHHHCCCCCCCCEEEEEEEECCCC
GLELAKQFSNMKKPPMVVFVTAYDEYALNAFKLDAIDYIVKPIDRGRLIKAVEKLIKLGS
CHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCC
VPNSENLVKPLPLPSTHNDKKHSITVKQADRIIIINTKDILYIGTENRQAYIQTLEKKYP
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHCC
TDTLLYKMMDKLGDNFIQVHRGYIVNTKQIAALEPWFNRTYLIILKDGSKIAVSRSYVKA
HHHHHHHHHHHHCCCEEEEECCEEECCHHEEEECCCCCCEEEEEEECCCEEEEHHHHHHH
VKQVLGL
HHHHHCC
>Mature Secondary Structure
MNVYVVEDEVLARQELIYLLKDTGKINVVGEADDIHQALWDINEKQPDAVFLDIELEGGN
CEEEEECHHHHHHHHHHHEEECCCEEEEEECHHHHHHHHHCCCCCCCCEEEEEEEECCCC
GLELAKQFSNMKKPPMVVFVTAYDEYALNAFKLDAIDYIVKPIDRGRLIKAVEKLIKLGS
CHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCC
VPNSENLVKPLPLPSTHNDKKHSITVKQADRIIIINTKDILYIGTENRQAYIQTLEKKYP
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCHHHHHHHHHHCC
TDTLLYKMMDKLGDNFIQVHRGYIVNTKQIAALEPWFNRTYLIILKDGSKIAVSRSYVKA
HHHHHHHHHHHHCCCEEEEECCEEECCHHEEEECCCCCCEEEEEEECCCEEEEHHHHHHH
VKQVLGL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]