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The map label for this gene is rfbC [H]

Identifier: 93005456

GI number: 93005456

Start: 745254

End: 745787

Strand: Direct

Name: rfbC [H]

Synonym: Pcryo_0626

Alternate gene names: 93005456

Gene position: 745254-745787 (Clockwise)

Preceding gene: 93005455

Following gene: 93005457

Centisome position: 24.36

GC content: 41.01

Gene sequence:

>534_bases
ATGCAAGTGATTAAAACTAAGTTAGCTGGCGTATTAATTATCGAACCAAAGATTTTTGGTGATTACCGTGGTTTTTTTAA
AGAAACCTTCAATGCTGAGCGTTATAAAGAACTTGCAGGTATTGATTTAACATTTGTACAAGACAATCACTCGCGCTCAG
GTAAGGGCGTATTACGCGGTTTGCACTTTCAGAAAACTAAGCCGCAAGGTAAGTTAGTTAGTGTCACGCTTGGCGCTGTT
TATGATGTTGCTGCTGATATAAATCCAGAATCATCCACATATGGAGAGTACGTGGGTGTTGAGCTGAGCGAAGATAATCA
TCGTCAGCTCTGGGTACCGCCCGGTTATGCACATGGCTTTTTAGTTATGAGTGATGAAGTAGATTTTGTATATAAGTGTA
CTGATTACTACGATCCTACTGATGAAGGCGGTATAGCGTGGAATTGCCCCTTGCTCAATATTGATTGGCCGATTAGTGAT
GTAAAGCTGTCAGATAAAGATAAAGCCTATGCGGGGTTGGAAGCTCATGTTTAG

Upstream 100 bases:

>100_bases
GCTGGTTAACGGCTGAACAGCTTAGATTACAAGCTACTGACCTAAGTAAGACAGGCTACGGACAGTATTTGCTGAATCTG
TTAGAGCAGGAGAATTGATC

Downstream 100 bases:

>100_bases
AGTCCTAGTGACCGGTGCTAAAGGGCAGGTTGGCAGCGAGTTGGTTAATTTGGTGCCTGCAGGCTTTACTGTGATTGGGC
TGAGTTCTGCTCAATTGGAT

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: Thymidine diphospho-4-keto-rhamnose 3,5-epimerase; dTDP-4-keto-6-deoxyglucose 3,5-epimerase; dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MQVIKTKLAGVLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRSGKGVLRGLHFQKTKPQGKLVSVTLGAV
YDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGFLVMSDEVDFVYKCTDYYDPTDEGGIAWNCPLLNIDWPISD
VKLSDKDKAYAGLEAHV

Sequences:

>Translated_177_residues
MQVIKTKLAGVLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRSGKGVLRGLHFQKTKPQGKLVSVTLGAV
YDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGFLVMSDEVDFVYKCTDYYDPTDEGGIAWNCPLLNIDWPISD
VKLSDKDKAYAGLEAHV
>Mature_177_residues
MQVIKTKLAGVLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRSGKGVLRGLHFQKTKPQGKLVSVTLGAV
YDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGFLVMSDEVDFVYKCTDYYDPTDEGGIAWNCPLLNIDWPISD
VKLSDKDKAYAGLEAHV

Specific function: Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4- hexulose [H]

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788350, Length=176, Percent_Identity=53.9772727272727, Blast_Score=193, Evalue=6e-51,
Organism=Caenorhabditis elegans, GI17550412, Length=173, Percent_Identity=44.5086705202312, Blast_Score=140, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: =5.1.3.13 [H]

Molecular weight: Translated: 19826; Mature: 19826

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVIKTKLAGVLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRSGKGVLRG
CCCEEECCCEEEEECCEECCCHHHHHHHHCCHHHHHHHHCCEEEEEECCCCCCCCHHEEC
LHFQKTKPQGKLVSVTLGAVYDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGF
CEEECCCCCCCEEEEEECEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE
LVMSDEVDFVYKCTDYYDPTDEGGIAWNCPLLNIDWPISDVKLSDKDKAYAGLEAHV
EEEECCCCEEEEECCCCCCCCCCCEEEECEEEEECCCCCCCEECCCCCEECCEEECC
>Mature Secondary Structure
MQVIKTKLAGVLIIEPKIFGDYRGFFKETFNAERYKELAGIDLTFVQDNHSRSGKGVLRG
CCCEEECCCEEEEECCEECCCHHHHHHHHCCHHHHHHHHCCEEEEEECCCCCCCCHHEEC
LHFQKTKPQGKLVSVTLGAVYDVAADINPESSTYGEYVGVELSEDNHRQLWVPPGYAHGF
CEEECCCCCCCEEEEEECEEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEE
LVMSDEVDFVYKCTDYYDPTDEGGIAWNCPLLNIDWPISDVKLSDKDKAYAGLEAHV
EEEECCCCEEEEECCCCCCCCCCCEEEECEEEEECCCCCCCEECCCCCEECCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609; 10802738 [H]