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The map label for this gene is cspV [H]

Identifier: 93005356

GI number: 93005356

Start: 622731

End: 622943

Strand: Direct

Name: cspV [H]

Synonym: Pcryo_0526

Alternate gene names: 93005356

Gene position: 622731-622943 (Clockwise)

Preceding gene: 93005355

Following gene: 93005357

Centisome position: 20.35

GC content: 44.6

Gene sequence:

>213_bases
ATGTCAGATAAAGTTGAAGGCACTGTAAAGTGGTTTAATGAAGCTAAAGGTTTTGGTTTTATCGCGCAAGACAACGGCGG
ACAAGACGTATTCGCTCACTACAGCGCTATCCAAGGCGGTGGTTTCAAAACTCTAGCCGAAGGCCAAAAAGTGTCTTTCA
TCTTAGGTGATGGCAAGAAAGGCCCACAAGCTGAGCAAATCGAAGCTATCTAA

Upstream 100 bases:

>100_bases
AATGATTTTACCCACGCATTCTGCAAGAAAAACTTAGGTATATATCAATTAATCGGTGATGACACAAGTCTCGCCAACAG
TTAAAGAGTTAGGAAAATTT

Downstream 100 bases:

>100_bases
TCTCATTTGACATTGAGTAAGCTGTTCTTCAGCGCGCTTAATGACAGTAAGATTATCAATATGCATTGATGCCTTTGTTT
GTTAAAACAATAAAAATACT

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSDKVEGTVKWFNEAKGFGFIAQDNGGQDVFAHYSAIQGGGFKTLAEGQKVSFILGDGKKGPQAEQIEAI

Sequences:

>Translated_70_residues
MSDKVEGTVKWFNEAKGFGFIAQDNGGQDVFAHYSAIQGGGFKTLAEGQKVSFILGDGKKGPQAEQIEAI
>Mature_69_residues
SDKVEGTVKWFNEAKGFGFIAQDNGGQDVFAHYSAIQGGGFKTLAEGQKVSFILGDGKKGPQAEQIEAI

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=64.1791044776119, Blast_Score=90, Evalue=3e-20,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=58.8235294117647, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=51.4285714285714, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=54.2857142857143, Blast_Score=82, Evalue=9e-18,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=55.2238805970149, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=55.3846153846154, Blast_Score=76, Evalue=5e-16,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7450; Mature: 7319

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKVEGTVKWFNEAKGFGFIAQDNGGQDVFAHYSAIQGGGFKTLAEGQKVSFILGDGKK
CCCCCCHHEEECCCCCCCEEEEECCCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCC
GPQAEQIEAI
CCCCCCCCCC
>Mature Secondary Structure 
SDKVEGTVKWFNEAKGFGFIAQDNGGQDVFAHYSAIQGGGFKTLAEGQKVSFILGDGKK
CCCCCHHEEECCCCCCCEEEEECCCCCCEEEEEEECCCCCCEECCCCCEEEEEEECCCC
GPQAEQIEAI
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]