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The map label for this gene is yaaD [H]

Identifier: 93005229

GI number: 93005229

Start: 484736

End: 485233

Strand: Reverse

Name: yaaD [H]

Synonym: Pcryo_0399

Alternate gene names: 93005229

Gene position: 485233-484736 (Counterclockwise)

Preceding gene: 93005231

Following gene: 93005228

Centisome position: 15.86

GC content: 44.98

Gene sequence:

>498_bases
ATGACCGACTCGCAATTTATTACACCCAATGAAGATGTACGTATCACCTTTGGCAGCCTAGTTAAGCTGCATTTTGAAGT
ATCGCTCGAGAATGGCACCGTAATTGATTCAACCTTTAGCCGTGATACACCCGTTACTTTAACTATAGGTGATGAGAGCT
TGTTACCTGGCTTTGAGCAAGTGCTGATGAATCTGCGTGCAGGCGATACGCGTTCCGCTCATCTTGAGCCAGAGCAAGCA
TTTGGTGAATGGAATCCTGACAACATCCAACGCTTTAGCCCTACTCAGTTTGCGCTTATCGCTGACAATCCTGAAATTGG
CATGCTAGTAGAATTTGAAGACAAAGGTAAAAACACTCTACCCGGTACGATTAGCGCCATCACTGATGACGAAGTAGAAG
TAGACTTTAACCATCCGCTTGCTGGACAATCTGTGCAGTTTAAAATTAAAATCTTTCAAGTGACGCCGCCGGGTGTCACA
GGCATCAAGCTCATGTAA

Upstream 100 bases:

>100_bases
TACGTTACACTATTGGCGCTTACAACCTTTTCTAAATGACTTATCATTTCTTATATTGATGTCCACCTAACTTCCTACTC
CAGTAATAGGTAAATTTTCC

Downstream 100 bases:

>100_bases
TATAAAAATTGCTTTAGAATAAAATAAAAAAGGAAGAACATATGCAATATCAAACACTGCCGCAACTCAATGAAAAAGTC
TCCAAAATCTGCTTGGGAAC

Product: FKBP-type peptidylprolyl isomerase

Products: NA

Alternate protein names: PPIase; Rotamase [H]

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MTDSQFITPNEDVRITFGSLVKLHFEVSLENGTVIDSTFSRDTPVTLTIGDESLLPGFEQVLMNLRAGDTRSAHLEPEQA
FGEWNPDNIQRFSPTQFALIADNPEIGMLVEFEDKGKNTLPGTISAITDDEVEVDFNHPLAGQSVQFKIKIFQVTPPGVT
GIKLM

Sequences:

>Translated_165_residues
MTDSQFITPNEDVRITFGSLVKLHFEVSLENGTVIDSTFSRDTPVTLTIGDESLLPGFEQVLMNLRAGDTRSAHLEPEQA
FGEWNPDNIQRFSPTQFALIADNPEIGMLVEFEDKGKNTLPGTISAITDDEVEVDFNHPLAGQSVQFKIKIFQVTPPGVT
GIKLM
>Mature_164_residues
TDSQFITPNEDVRITFGSLVKLHFEVSLENGTVIDSTFSRDTPVTLTIGDESLLPGFEQVLMNLRAGDTRSAHLEPEQAF
GEWNPDNIQRFSPTQFALIADNPEIGMLVEFEDKGKNTLPGTISAITDDEVEVDFNHPLAGQSVQFKIKIFQVTPPGVTG
IKLM

Specific function: PPIases accelerate the folding of proteins [H]

COG id: COG1047

COG function: function code O; FKBP-type peptidyl-prolyl cis-trans isomerases 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PPIase FKBP-type domain [H]

Homologues:

Organism=Escherichia coli, GI1786211, Length=138, Percent_Identity=42.7536231884058, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI1789748, Length=136, Percent_Identity=30.1470588235294, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001179 [H]

Pfam domain/function: PF00254 FKBP_C [H]

EC number: =5.2.1.8 [H]

Molecular weight: Translated: 18224; Mature: 18093

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: PS50059 FKBP_PPIASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSQFITPNEDVRITFGSLVKLHFEVSLENGTVIDSTFSRDTPVTLTIGDESLLPGFEQ
CCCCCEECCCCCEEEEECCEEEEEEEEEECCCEEEECCCCCCCCEEEEECCCHHCCCHHH
VLMNLRAGDTRSAHLEPEQAFGEWNPDNIQRFSPTQFALIADNPEIGMLVEFEDKGKNTL
HHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCEEEEEECCCCEEEEEEECCCCCCCC
PGTISAITDDEVEVDFNHPLAGQSVQFKIKIFQVTPPGVTGIKLM
CCEEEEECCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEEC
>Mature Secondary Structure 
TDSQFITPNEDVRITFGSLVKLHFEVSLENGTVIDSTFSRDTPVTLTIGDESLLPGFEQ
CCCCEECCCCCEEEEECCEEEEEEEEEECCCEEEECCCCCCCCEEEEECCCHHCCCHHH
VLMNLRAGDTRSAHLEPEQAFGEWNPDNIQRFSPTQFALIADNPEIGMLVEFEDKGKNTL
HHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCEEEEEECCCCEEEEEEECCCCCCCC
PGTISAITDDEVEVDFNHPLAGQSVQFKIKIFQVTPPGVTGIKLM
CCEEEEECCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2121716 [H]