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The map label for this gene is rarD [C]

Identifier: 93005188

GI number: 93005188

Start: 436315

End: 437325

Strand: Direct

Name: rarD [C]

Synonym: Pcryo_0357

Alternate gene names: 93005188

Gene position: 436315-437325 (Clockwise)

Preceding gene: 93005183

Following gene: 93005190

Centisome position: 14.26

GC content: 45.5

Gene sequence:

>1011_bases
ATGTCTACTTCAATCCTAACCAATACTGTAGCATCGACTTTGTCGCGTTTCCCGATGCCAGCAATGTGGACCAAAGGCAG
CGTGCAGCAGCGCACTTTAATGATGGGTGTAGCACTAGCAGTCCTATCCAACGTATTGTTTGGCGTGCTATATGCTTATA
GCAGTTTTTTAGCACCGTTATCAGGGACACAAGTATTTATCTGGCGGATGCTGGCAATGTGGGCGGCATTGGTGGGATAT
TTGCTGATCAGTGGGCGCTTAGGTTTTCACATCGATAAACTCAAAGCATTAGGCTCTGTTAAACAATGGGCATGGTTGCT
ATTGCCCACACCAATATTCTTAAGCCAGTTTTGGTTATTTATGTGGGCGCCAGTCAATGGGCAGGGCGTACAGACCGCGA
TGGGTTATTTTTTATTTCCGCTCATGATGGTGGTGTTTGGATGCGTATTGTTCGGTGAAAAGTTAAGCCGTTTGCAATGG
TTGGCGGTTGCTTTTGCCGCAGTTGGAGTCGGCAGTGAGATTGTACGTACGCAAAGCGTCTCGTGGGCAACACTATGGGT
CTGCGGTACTTATCCTGTTTATTATATTTTGCGCCGTTTGCAAGGTATTGGCGCAGTTACTGGGTTATTGATTGATTTAA
CCATATTCGCACCATTTGCTTTGGCGTACTTATTTTTTATTGCCCCAAGTAGTTTAAGCTTAGTCAGCGGCTCTGGGTTC
TTTATTGCGATGCTGGTAGGACTCGGCGTTATGAGCGTGCTGGCCATGAAAACCAACGTCGATGCTAGTCAAATGCTGCC
AATGAACGTTTATGGTATGATGAGTTATTTGGAGCCCGCATTACTATTTATCTTAGCAATAACCGTTTTGGGCAATCCTT
TTGAATCGGCGATGATTTATAGCTATGGTCTTATTTGGGTCGGGATAGCTTGTCTGATTGTGCATGGTGTACGTCAATTA
CGCCGCGCCCATCAACAATCGCAAACGACAGAAATTGCACCAGTTATTTGA

Upstream 100 bases:

>100_bases
TTTTTTCACAACCACTGGCTATAAACTAAGCTTTATATATTAGAAAATAATAATCTCTATCAAATAGTGTTCTCACTGCT
CATGCAAATAAAGGTGCTTT

Downstream 100 bases:

>100_bases
AAATTAATCAATAAGAGTAATCGAATAAATAAAAACGGACGATTCAACATTATGCTGAATCGTCCGTTTTCAAAAGATTA
ACCCCAATCTTTTGAAAGAG

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSTSILTNTVASTLSRFPMPAMWTKGSVQQRTLMMGVALAVLSNVLFGVLYAYSSFLAPLSGTQVFIWRMLAMWAALVGY
LLISGRLGFHIDKLKALGSVKQWAWLLLPTPIFLSQFWLFMWAPVNGQGVQTAMGYFLFPLMMVVFGCVLFGEKLSRLQW
LAVAFAAVGVGSEIVRTQSVSWATLWVCGTYPVYYILRRLQGIGAVTGLLIDLTIFAPFALAYLFFIAPSSLSLVSGSGF
FIAMLVGLGVMSVLAMKTNVDASQMLPMNVYGMMSYLEPALLFILAITVLGNPFESAMIYSYGLIWVGIACLIVHGVRQL
RRAHQQSQTTEIAPVI

Sequences:

>Translated_336_residues
MSTSILTNTVASTLSRFPMPAMWTKGSVQQRTLMMGVALAVLSNVLFGVLYAYSSFLAPLSGTQVFIWRMLAMWAALVGY
LLISGRLGFHIDKLKALGSVKQWAWLLLPTPIFLSQFWLFMWAPVNGQGVQTAMGYFLFPLMMVVFGCVLFGEKLSRLQW
LAVAFAAVGVGSEIVRTQSVSWATLWVCGTYPVYYILRRLQGIGAVTGLLIDLTIFAPFALAYLFFIAPSSLSLVSGSGF
FIAMLVGLGVMSVLAMKTNVDASQMLPMNVYGMMSYLEPALLFILAITVLGNPFESAMIYSYGLIWVGIACLIVHGVRQL
RRAHQQSQTTEIAPVI
>Mature_335_residues
STSILTNTVASTLSRFPMPAMWTKGSVQQRTLMMGVALAVLSNVLFGVLYAYSSFLAPLSGTQVFIWRMLAMWAALVGYL
LISGRLGFHIDKLKALGSVKQWAWLLLPTPIFLSQFWLFMWAPVNGQGVQTAMGYFLFPLMMVVFGCVLFGEKLSRLQWL
AVAFAAVGVGSEIVRTQSVSWATLWVCGTYPVYYILRRLQGIGAVTGLLIDLTIFAPFALAYLFFIAPSSLSLVSGSGFF
IAMLVGLGVMSVLAMKTNVDASQMLPMNVYGMMSYLEPALLFILAITVLGNPFESAMIYSYGLIWVGIACLIVHGVRQLR
RAHQQSQTTEIAPVI

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=292, Percent_Identity=26.7123287671233, Blast_Score=103, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 36896; Mature: 36765

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSILTNTVASTLSRFPMPAMWTKGSVQQRTLMMGVALAVLSNVLFGVLYAYSSFLAPL
CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTQVFIWRMLAMWAALVGYLLISGRLGFHIDKLKALGSVKQWAWLLLPTPIFLSQFWLF
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
MWAPVNGQGVQTAMGYFLFPLMMVVFGCVLFGEKLSRLQWLAVAFAAVGVGSEIVRTQSV
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
SWATLWVCGTYPVYYILRRLQGIGAVTGLLIDLTIFAPFALAYLFFIAPSSLSLVSGSGF
CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCHH
FIAMLVGLGVMSVLAMKTNVDASQMLPMNVYGMMSYLEPALLFILAITVLGNPFESAMIY
HHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
SYGLIWVGIACLIVHGVRQLRRAHQQSQTTEIAPVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
STSILTNTVASTLSRFPMPAMWTKGSVQQRTLMMGVALAVLSNVLFGVLYAYSSFLAPL
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]