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The map label for this gene is 93005136

Identifier: 93005136

GI number: 93005136

Start: 365852

End: 366544

Strand: Reverse

Name: 93005136

Synonym: Pcryo_0305

Alternate gene names: NA

Gene position: 366544-365852 (Counterclockwise)

Preceding gene: 93005139

Following gene: 93005135

Centisome position: 11.98

GC content: 41.41

Gene sequence:

>693_bases
ATGACAATAACCAACACAACCTATGTTATAAGTATTGCCTTACTTATCACTGCTATCTATCAGACTCAACCTAAGGACTA
TCCTTTGTTTAACCAGACGACGCTTATCATTATTATTACGGTTATTGTCAGTCTATTGGCGTGGCAAAACAAAGCAGTGT
TTAATCGACTGATTTTTTATCCCCCAGCAGTGAACAATGGTCAATGGGATCGCTTTGTGACTCATGGATTTATCCATGCT
GACAGCATGCACTTGCTCTTTAATATGTTCACTTTATACTTTTTTGGTCGTGCTATTGAGGGCTTATACCAAAAGTTTTT
GTTCGGTTATGGCTTTCTGCTTTTCTATGTACTGGCTATTATTGTTGCGATGATTCCAAGTTATATTAAGCACAAGCAAA
GTGCCAGCTATTTAAGCCTTGGCGCATCAGGCGGTGTCTCTGCTGTATTGTTTGCGTTTATATTGCTTGCTCCTTGGGAA
AAAATCTATCTGTTTGCGATCATTCCTATTCCCGCTATCTTATTTGCAGTGGCCTATGTCGCTTACAGTATCTATTCTGA
TAAACGCGGCGGCTCAAACATCAATCATATGGCCCATATGTGGGGCGGCGCATTTGGGGTGATAGCCACCATCATTTTAG
AGCCACAAGTCCTGCCGCATTTTCTAAATGCGCTGTTGTCGCCGGGGTTTTAA

Upstream 100 bases:

>100_bases
CAAGCATTAAAGCACAATTTTGTCCCATATTGGTTTTTGCATGATAATCGCTGCTACTATTATTAAGATGAATACGTAAC
TGTTTATTATTCATATTTGG

Downstream 100 bases:

>100_bases
AAATACATGACTGAAAATAACAGTAACGAACCAAGAAAAAAACGAATAACAGTGAGTATTATTTTCACAAAACCACTTTT
TACGCCCTTTTATATTTAAG

Product: rhomboid-like protein

Products: NA

Alternate protein names: Rhomboid-Like Protein; Transmembrane Rhomboid Family Protein

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MTITNTTYVISIALLITAIYQTQPKDYPLFNQTTLIIIITVIVSLLAWQNKAVFNRLIFYPPAVNNGQWDRFVTHGFIHA
DSMHLLFNMFTLYFFGRAIEGLYQKFLFGYGFLLFYVLAIIVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILLAPWE
KIYLFAIIPIPAILFAVAYVAYSIYSDKRGGSNINHMAHMWGGAFGVIATIILEPQVLPHFLNALLSPGF

Sequences:

>Translated_230_residues
MTITNTTYVISIALLITAIYQTQPKDYPLFNQTTLIIIITVIVSLLAWQNKAVFNRLIFYPPAVNNGQWDRFVTHGFIHA
DSMHLLFNMFTLYFFGRAIEGLYQKFLFGYGFLLFYVLAIIVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILLAPWE
KIYLFAIIPIPAILFAVAYVAYSIYSDKRGGSNINHMAHMWGGAFGVIATIILEPQVLPHFLNALLSPGF
>Mature_229_residues
TITNTTYVISIALLITAIYQTQPKDYPLFNQTTLIIIITVIVSLLAWQNKAVFNRLIFYPPAVNNGQWDRFVTHGFIHAD
SMHLLFNMFTLYFFGRAIEGLYQKFLFGYGFLLFYVLAIIVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILLAPWEK
IYLFAIIPIPAILFAVAYVAYSIYSDKRGGSNINHMAHMWGGAFGVIATIILEPQVLPHFLNALLSPGF

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25790; Mature: 25659

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITNTTYVISIALLITAIYQTQPKDYPLFNQTTLIIIITVIVSLLAWQNKAVFNRLIFY
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PPAVNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIEGLYQKFLFGYGFLLFYVLAI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILLAPWEKIYLFAIIPIPAILFAVAYV
HHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AYSIYSDKRGGSNINHMAHMWGGAFGVIATIILEPQVLPHFLNALLSPGF
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TITNTTYVISIALLITAIYQTQPKDYPLFNQTTLIIIITVIVSLLAWQNKAVFNRLIFY
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCC
PPAVNNGQWDRFVTHGFIHADSMHLLFNMFTLYFFGRAIEGLYQKFLFGYGFLLFYVLAI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVAMIPSYIKHKQSASYLSLGASGGVSAVLFAFILLAPWEKIYLFAIIPIPAILFAVAYV
HHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AYSIYSDKRGGSNINHMAHMWGGAFGVIATIILEPQVLPHFLNALLSPGF
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA