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The map label for this gene is yggS [H]

Identifier: 93005125

GI number: 93005125

Start: 352551

End: 353381

Strand: Direct

Name: yggS [H]

Synonym: Pcryo_0294

Alternate gene names: 93005125

Gene position: 352551-353381 (Clockwise)

Preceding gene: 93005122

Following gene: 93005128

Centisome position: 11.52

GC content: 42.6

Gene sequence:

>831_bases
ATGCATAGTGGTAAAGGATCGATACAATCAGCTCTCTTTGATTTCGAACTCACTATATCAACAAGAGTTTTTATGAATAT
GTCTTCTCAGCAAGTAATTAAAAATGTCGCAATCGATCTTAGCAATAATGATGAAGCAGAAGTTCAACATCTAACTGAGA
ACTGGCAGCAGGTAAAGACGCAAGTGGTACAGGCATGCGAACAAACGTTGCGAGCGCCGAGCAGTGTAACTTTGCTTGCG
GTGTCCAAAACCAAATCTGCTGAGATGGTGGCAACATTGGCGCGTCAAGGTCAGCATGATTTTGGTGAAAATTATCTACA
AGAAGCGATTGAAAAAATACAGTTGCTACGTGAGCAGGTAGGATGTAAGCATATTGTCTGGCACTATATTGGAAGCATTC
AGCGTAATAAAACCCGTGATATTGCTGAGCATTTTGATTGGGTACAAACGCTTGAGCGTGACATTATTGCCAAGCGTCTT
AACGACCAACGTCCTGCTGAACTGCCACCTTTAAACGTCTTGATCCAAATTAATATTGATAATGAAGACAGTAAGTCGGG
ATGTCTGCCAGAGCAGCTTCCAGAATTGTTAACAGCAATTAAAAATTATGAGCGTTTGCAATTGCGCGGATTGATGATTA
TTCCTGCTAAGGCAAATACAGATGCTTTTAAGCGCACCAAACAACTATTTGACGACATTAAGCGTACCCATCCTGAGCTG
AGTCAATGGGATACGCTGAGTATGGGTATGAGTGATGATATGACTGATGCGATTGCTAGTGGCACGACCATGGTACGTGT
TGGCACGGCGATATTTGGTGCGCGTGCTTGA

Upstream 100 bases:

>100_bases
AGCATATGTTAAACCATGTAACAATATCATAACAAGACTGTACTGATTTAACCATCTACTAACTGCATAAAATGCAAAAA
TAGATTGACTGGTTTTTCGC

Downstream 100 bases:

>100_bases
TGTAATAGTGAATTCAGTATTAAAACGATACAGTAGGACTGGGATGAATTTTATGCAGCCTCTGTCAGCGTAGTCACAGC
ACGCTAGAAAAATTTATACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MHSGKGSIQSALFDFELTISTRVFMNMSSQQVIKNVAIDLSNNDEAEVQHLTENWQQVKTQVVQACEQTLRAPSSVTLLA
VSKTKSAEMVATLARQGQHDFGENYLQEAIEKIQLLREQVGCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRL
NDQRPAELPPLNVLIQINIDNEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANTDAFKRTKQLFDDIKRTHPEL
SQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGARA

Sequences:

>Translated_276_residues
MHSGKGSIQSALFDFELTISTRVFMNMSSQQVIKNVAIDLSNNDEAEVQHLTENWQQVKTQVVQACEQTLRAPSSVTLLA
VSKTKSAEMVATLARQGQHDFGENYLQEAIEKIQLLREQVGCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRL
NDQRPAELPPLNVLIQINIDNEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANTDAFKRTKQLFDDIKRTHPEL
SQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGARA
>Mature_276_residues
MHSGKGSIQSALFDFELTISTRVFMNMSSQQVIKNVAIDLSNNDEAEVQHLTENWQQVKTQVVQACEQTLRAPSSVTLLA
VSKTKSAEMVATLARQGQHDFGENYLQEAIEKIQLLREQVGCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRL
NDQRPAELPPLNVLIQINIDNEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANTDAFKRTKQLFDDIKRTHPEL
SQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGARA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=211, Percent_Identity=34.5971563981043, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI1789321, Length=230, Percent_Identity=51.7391304347826, Blast_Score=229, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=38.0733944954128, Blast_Score=119, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=249, Percent_Identity=34.5381526104418, Blast_Score=109, Evalue=4e-25,
Organism=Drosophila melanogaster, GI45550861, Length=213, Percent_Identity=40.3755868544601, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 31147; Mature: 31147

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSGKGSIQSALFDFELTISTRVFMNMSSQQVIKNVAIDLSNNDEAEVQHLTENWQQVKT
CCCCCHHHHHHHHHEEEEEHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QVVQACEQTLRAPSSVTLLAVSKTKSAEMVATLARQGQHDFGENYLQEAIEKIQLLREQV
HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNDQRPAELPPLNVLIQINID
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
NEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANTDAFKRTKQLFDDIKRTHPEL
CCCCCCCCCHHHHHHHHHHHHCHHHHEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCH
SQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGARA
HHCCHHHCCCCCHHHHHHHCCCHHEEHHHHHHCCCC
>Mature Secondary Structure
MHSGKGSIQSALFDFELTISTRVFMNMSSQQVIKNVAIDLSNNDEAEVQHLTENWQQVKT
CCCCCHHHHHHHHHEEEEEHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QVVQACEQTLRAPSSVTLLAVSKTKSAEMVATLARQGQHDFGENYLQEAIEKIQLLREQV
HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GCKHIVWHYIGSIQRNKTRDIAEHFDWVQTLERDIIAKRLNDQRPAELPPLNVLIQINID
CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEC
NEDSKSGCLPEQLPELLTAIKNYERLQLRGLMIIPAKANTDAFKRTKQLFDDIKRTHPEL
CCCCCCCCCHHHHHHHHHHHHCHHHHEECCEEEEECCCCCHHHHHHHHHHHHHHHCCCCH
SQWDTLSMGMSDDMTDAIASGTTMVRVGTAIFGARA
HHCCHHHCCCCCHHHHHHHCCCHHEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]