Click here to switch to the map view.

The map label for this gene is 93005073

Identifier: 93005073

GI number: 93005073

Start: 284172

End: 284642

Strand: Reverse

Name: 93005073

Synonym: Pcryo_0242

Alternate gene names: NA

Gene position: 284642-284172 (Counterclockwise)

Preceding gene: 93005074

Following gene: 93005070

Centisome position: 9.3

GC content: 43.31

Gene sequence:

>471_bases
ATGACTCAGGTATCGAATCAAAAATCATTAAAATCTATCTTTGCTATTACTTTGATGGCAGCCACTTTAGGACTGACGGC
TTGTAGTACACCAGTAGACCCTGATGTCAAAGCTCGTCAGGACATCATGAAGAACTTCGGTGATGCAATGAAGGTTATGG
GTGGCATGGCAAAAGAGCCGGATACTTTTGATGCTGACGTTTTCAAAGAGCAGGCGGCATTTTTAGCAGAAGAGTCTAAA
AATCCTTGGAGCCATTTTAATAATAAAGACGCCGCTGGCAATGCCAAAGCAGAGGTTTGGTCAAATGTTGATGGCTTTAA
AGCTGAAGCAGAGAATTTCCAAAAGGTCACTGCTGAGCTAAGCGCTGCTGCACAGACAGCAACTAGCATTGACGATGTGA
TGCCAGCTTTTAAACCTGTTGGCGACAGCTGTAAATCTTGCCATACGGATTTCCAAGTCGAAAAAGACTAA

Upstream 100 bases:

>100_bases
ATCGGATAAAATTTATTTTAATAGTAGCCATTTAATCAGGTGACGAGCATGCATATGCTACGCCACCTTTTTATTAGCAA
CGTAAAAAGGAGCACTACTC

Downstream 100 bases:

>100_bases
ATAAGAATCCTTTAGCAATATAAAAAGCCACCCTATCAAACAATAAGGTGGCTTTTTTATTCGCTTAACTTATGAATCAA
TTAAGCCATCAAGTCTGCTT

Product: cytochrome c, class II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTQVSNQKSLKSIFAITLMAATLGLTACSTPVDPDVKARQDIMKNFGDAMKVMGGMAKEPDTFDADVFKEQAAFLAEESK
NPWSHFNNKDAAGNAKAEVWSNVDGFKAEAENFQKVTAELSAAAQTATSIDDVMPAFKPVGDSCKSCHTDFQVEKD

Sequences:

>Translated_156_residues
MTQVSNQKSLKSIFAITLMAATLGLTACSTPVDPDVKARQDIMKNFGDAMKVMGGMAKEPDTFDADVFKEQAAFLAEESK
NPWSHFNNKDAAGNAKAEVWSNVDGFKAEAENFQKVTAELSAAAQTATSIDDVMPAFKPVGDSCKSCHTDFQVEKD
>Mature_155_residues
TQVSNQKSLKSIFAITLMAATLGLTACSTPVDPDVKARQDIMKNFGDAMKVMGGMAKEPDTFDADVFKEQAAFLAEESKN
PWSHFNNKDAAGNAKAEVWSNVDGFKAEAENFQKVTAELSAAAQTATSIDDVMPAFKPVGDSCKSCHTDFQVEKD

Specific function: Cytochrome c' is the most widely occurring bacterial c- type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known [H]

COG id: COG3909

COG function: function code C; Cytochrome c556

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010980
- InterPro:   IPR002321
- InterPro:   IPR012127
- InterPro:   IPR015984 [H]

Pfam domain/function: PF01322 Cytochrom_C_2 [H]

EC number: NA

Molecular weight: Translated: 16834; Mature: 16703

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVSNQKSLKSIFAITLMAATLGLTACSTPVDPDVKARQDIMKNFGDAMKVMGGMAKEP
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
DTFDADVFKEQAAFLAEESKNPWSHFNNKDAAGNAKAEVWSNVDGFKAEAENFQKVTAEL
CCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
SAAAQTATSIDDVMPAFKPVGDSCKSCHTDFQVEKD
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEECCC
>Mature Secondary Structure 
TQVSNQKSLKSIFAITLMAATLGLTACSTPVDPDVKARQDIMKNFGDAMKVMGGMAKEP
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
DTFDADVFKEQAAFLAEESKNPWSHFNNKDAAGNAKAEVWSNVDGFKAEAENFQKVTAEL
CCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
SAAAQTATSIDDVMPAFKPVGDSCKSCHTDFQVEKD
HHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6273892 [H]