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The map label for this gene is ygdD [C]

Identifier: 93005057

GI number: 93005057

Start: 270372

End: 270740

Strand: Reverse

Name: ygdD [C]

Synonym: Pcryo_0226

Alternate gene names: 93005057

Gene position: 270740-270372 (Counterclockwise)

Preceding gene: 93005058

Following gene: 93005056

Centisome position: 8.85

GC content: 46.61

Gene sequence:

>369_bases
ATGTTCAATTGGATAAGTATCGCGGCGATCAATATGGCTATCGCCGTTGCTTTAGGCGCGTTTGGCGCGCATGGTCTCAA
AGATATGGTCAGCACTCAACAGCTAGAATGGTGGCAGACAGCAACCCTATATTGGTTCGTCCATTCGCTTGGATTATTAC
TTGTTGGTATCCTTATTCGCTTAAACTATGCAACCCAAACCGCCGCATGGTTATTACAAATTGGTGTCATTATTTTTGCG
GGTAGTTTATACGCCATGACACTTGGTGCGCCACGTTGGTTCGGTGCCATTACGCCTATTGGCGGTGTGCTGATGATTGC
AGGTTGGTTATGGCTTGCGCTATCTTCAGCACGCTTAACAAATAGCTGA

Upstream 100 bases:

>100_bases
TCGACAGTGTGATTTTACCTGATGATATTCAATAAGTTGCTTATCGATAAGACAACTGTCTTTGCTTAGTAAGCATTTAT
TCAACAATACGAGTACAACC

Downstream 100 bases:

>100_bases
TTGATTGATTTTAGTAAGAAACAATCTTATTTTATTTAGCTACGTTAGTGCTAGTAGTAGTGAAAATAGTAAGGCTAAAT
AGGAATTTTGGATTATTAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MFNWISIAAINMAIAVALGAFGAHGLKDMVSTQQLEWWQTATLYWFVHSLGLLLVGILIRLNYATQTAAWLLQIGVIIFA
GSLYAMTLGAPRWFGAITPIGGVLMIAGWLWLALSSARLTNS

Sequences:

>Translated_122_residues
MFNWISIAAINMAIAVALGAFGAHGLKDMVSTQQLEWWQTATLYWFVHSLGLLLVGILIRLNYATQTAAWLLQIGVIIFA
GSLYAMTLGAPRWFGAITPIGGVLMIAGWLWLALSSARLTNS
>Mature_122_residues
MFNWISIAAINMAIAVALGAFGAHGLKDMVSTQQLEWWQTATLYWFVHSLGLLLVGILIRLNYATQTAAWLLQIGVIIFA
GSLYAMTLGAPRWFGAITPIGGVLMIAGWLWLALSSARLTNS

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=117, Percent_Identity=35.8974358974359, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13281; Mature: 13281

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNWISIAAINMAIAVALGAFGAHGLKDMVSTQQLEWWQTATLYWFVHSLGLLLVGILIR
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNYATQTAAWLLQIGVIIFAGSLYAMTLGAPRWFGAITPIGGVLMIAGWLWLALSSARLT
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
NS
CC
>Mature Secondary Structure
MFNWISIAAINMAIAVALGAFGAHGLKDMVSTQQLEWWQTATLYWFVHSLGLLLVGILIR
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNYATQTAAWLLQIGVIIFAGSLYAMTLGAPRWFGAITPIGGVLMIAGWLWLALSSARLT
HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
NS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA