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The map label for this gene is rbfA [H]

Identifier: 93004906

GI number: 93004906

Start: 87490

End: 87894

Strand: Direct

Name: rbfA [H]

Synonym: Pcryo_0075

Alternate gene names: 93004906

Gene position: 87490-87894 (Clockwise)

Preceding gene: 93004905

Following gene: 93004907

Centisome position: 2.86

GC content: 43.7

Gene sequence:

>405_bases
ATGAACCAACGTTTACAACGTTTAGCTGATCAGATTCAGCGTGAGCTTGCTGTCCTTATCCGTGACGCGGTCAATGATCC
GCGTCTGACAGGTTTTGTCACTATCTCTAGCATTAAAGTCAGCCCAGATTTGGGCTATGCTGATGTGTATGTGACCATTA
TGGAGCCTGAGCTCAATGATGCCATGACCATGTCAAATCATGAAGAAAGCATCAAGGTGCTAAATAAAGCAGCAGGCTTC
TTGCGTACTGAGCTGAGTCATAGTTTGAAGACTCGCACAACACCGCGTTTGCGCTTTCATTATGATGAAGTGACTGCCCG
TGGTAATTACATGATGGATTTAATCAGTAAAGCGGTTATTAAAACTGAAGAAAATGAGTCTGACGAGCAAGAAAACGAAG
AGTAG

Upstream 100 bases:

>100_bases
AGGCCTAACAGGTACATCCTGCTAGGCCTTTTTTAACAAATATTAGGCGTTAAACTTATTAATAAATGATTATATTGATC
AATAAAAACAAGGTAATAAC

Downstream 100 bases:

>100_bases
AAGGGTAAAAGTCATTATGTCTATCGCATCTACGCAAGCGGATAAAAAGTCTAGTAATCACCCTAACAAGATTAAAGTTT
CTGGTGTTATTTTAGTCGAT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MNQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSIKVSPDLGYADVYVTIMEPELNDAMTMSNHEESIKVLNKAAGF
LRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVIKTEENESDEQENEE

Sequences:

>Translated_134_residues
MNQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSIKVSPDLGYADVYVTIMEPELNDAMTMSNHEESIKVLNKAAGF
LRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVIKTEENESDEQENEE
>Mature_134_residues
MNQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSIKVSPDLGYADVYVTIMEPELNDAMTMSNHEESIKVLNKAAGF
LRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVIKTEENESDEQENEE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=132, Percent_Identity=35.6060606060606, Blast_Score=87, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15359; Mature: 15359

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSIKVSPDLGYADVYVTIMEPELND
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCC
AMTMSNHEESIKVLNKAAGFLRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCHHHHHHHHHHH
KTEENESDEQENEE
HCCCCCCCCCCCCC
>Mature Secondary Structure
MNQRLQRLADQIQRELAVLIRDAVNDPRLTGFVTISSIKVSPDLGYADVYVTIMEPELND
CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCEEEEEEEEECCCCCC
AMTMSNHEESIKVLNKAAGFLRTELSHSLKTRTTPRLRFHYDEVTARGNYMMDLISKAVI
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCHHHHHHHHHHH
KTEENESDEQENEE
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA