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The map label for this gene is qseD [H]

Identifier: 92113959

GI number: 92113959

Start: 2093200

End: 2094120

Strand: Direct

Name: qseD [H]

Synonym: Csal_1836

Alternate gene names: 92113959

Gene position: 2093200-2094120 (Clockwise)

Preceding gene: 92113958

Following gene: 92113961

Centisome position: 56.62

GC content: 63.74

Gene sequence:

>921_bases
GTGAACCTTGAAACCAAGTGGCTCGAAGATTTCGTCGCCCTCGCCAATACCCGCAGCTTTTCCGCCTCGGCACGGCAACG
TCACGTCACGCAGCCGGCCTTCAGTCGTCGCATTCGCTCCCTGGAGCAGGCCGTAGGCGCAACGCTGGTCGACCGCTCCA
CGACGCCCATCGGTCTGACACCGGAAGGGCAGTTGTTCCTGGTCACGGCGCGCAGCATGGTCGAGCAGTTGAGCGAATGC
CTCGCGCATCTGCGCGGTCTGTCGATGGCCAACGAAGCGCTCGATATCGTCGCCGCGCACTCCCTGGCGCTGACCTTTTT
TCCGCACTGGATTTCGCGCCTGCAGAAAGGCGTCGGCGAACTGCCCACACGACTGGTGGCCATGAACGTCGGCGATGCGA
TCCACGTGCTGCGCGAGGGGAACTGCGACCTGATGCTGGCGTACTACGATCCCTATGCCAGCATGCAGCTCGATGCCGAG
GCCTTTCCGTCGTTTTCCATCGGCCAGGTCAACATGCTGCCGGTCTGCGTGCCGGATACCGACGGCGCTCCGCGCTTCTC
GCTGGATGACGATACGGCAGGCGTTCCCTTCCTCGCCTACACCCAGGGGGCTTTCCTGGGACGTAGCGTGCGCATGCTGC
TCAAGAACGATCCGCTGCGAATGCGCCTGAAGACCGTCTACGAGACCGCCATGGCGGAAGGGCTCAAGGGCATGGCGCTG
CAAGGCGTGGGCATGGCATGGATCCCCGATTTCTGCATTCGCGAGGAACTGGCCTCGGGGCGCCTGGTTCGCGCGGGGGG
CACGCAGTGGGACATCCCGCTGGAAATTCGCCTCTATCGCTGCTCGCTGGTGCACAAGCCCGGTGTCGAGAAGCTCTGGC
GGCAGATGATGAAGCTGCCGCGCGATTTCCTCCAGGCGTAA

Upstream 100 bases:

>100_bases
GCCTATTTGCTGGCTCCGATACAATGAGTGAAGCATGACGACGTCGCATCGCCAGGTCCATGTCATCCATCCACCATGCC
CGCCGTGATCAGGAGTGCCG

Downstream 100 bases:

>100_bases
CGTCCCGAGCGGTATCGCCCTGGGCCGGACGAGGAGGGCGCGAGGCGCTCAGGGCGTGGCCATGCCCGCCGGCAGGCCCA
GAAAGTTTTGTATGATGAAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNLETKWLEDFVALANTRSFSASARQRHVTQPAFSRRIRSLEQAVGATLVDRSTTPIGLTPEGQLFLVTARSMVEQLSEC
LAHLRGLSMANEALDIVAAHSLALTFFPHWISRLQKGVGELPTRLVAMNVGDAIHVLREGNCDLMLAYYDPYASMQLDAE
AFPSFSIGQVNMLPVCVPDTDGAPRFSLDDDTAGVPFLAYTQGAFLGRSVRMLLKNDPLRMRLKTVYETAMAEGLKGMAL
QGVGMAWIPDFCIREELASGRLVRAGGTQWDIPLEIRLYRCSLVHKPGVEKLWRQMMKLPRDFLQA

Sequences:

>Translated_306_residues
MNLETKWLEDFVALANTRSFSASARQRHVTQPAFSRRIRSLEQAVGATLVDRSTTPIGLTPEGQLFLVTARSMVEQLSEC
LAHLRGLSMANEALDIVAAHSLALTFFPHWISRLQKGVGELPTRLVAMNVGDAIHVLREGNCDLMLAYYDPYASMQLDAE
AFPSFSIGQVNMLPVCVPDTDGAPRFSLDDDTAGVPFLAYTQGAFLGRSVRMLLKNDPLRMRLKTVYETAMAEGLKGMAL
QGVGMAWIPDFCIREELASGRLVRAGGTQWDIPLEIRLYRCSLVHKPGVEKLWRQMMKLPRDFLQA
>Mature_306_residues
MNLETKWLEDFVALANTRSFSASARQRHVTQPAFSRRIRSLEQAVGATLVDRSTTPIGLTPEGQLFLVTARSMVEQLSEC
LAHLRGLSMANEALDIVAAHSLALTFFPHWISRLQKGVGELPTRLVAMNVGDAIHVLREGNCDLMLAYYDPYASMQLDAE
AFPSFSIGQVNMLPVCVPDTDGAPRFSLDDDTAGVPFLAYTQGAFLGRSVRMLLKNDPLRMRLKTVYETAMAEGLKGMAL
QGVGMAWIPDFCIREELASGRLVRAGGTQWDIPLEIRLYRCSLVHKPGVEKLWRQMMKLPRDFLQA

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=300, Percent_Identity=36.3333333333333, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI145693105, Length=136, Percent_Identity=25.7352941176471, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34043; Mature: 34043

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50931 HTH_LYSR ; PS00435 PEROXIDASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLETKWLEDFVALANTRSFSASARQRHVTQPAFSRRIRSLEQAVGATLVDRSTTPIGLT
CCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PEGQLFLVTARSMVEQLSECLAHLRGLSMANEALDIVAAHSLALTFFPHWISRLQKGVGE
CCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPTRLVAMNVGDAIHVLREGNCDLMLAYYDPYASMQLDAEAFPSFSIGQVNMLPVCVPDT
HCCEEEEECCCHHHHHEECCCCCEEEEEECCCCCEEECHHHCCCCCCCCEEEEEEEECCC
DGAPRFSLDDDTAGVPFLAYTQGAFLGRSVRMLLKNDPLRMRLKTVYETAMAEGLKGMAL
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEE
QGVGMAWIPDFCIREELASGRLVRAGGTQWDIPLEIRLYRCSLVHKPGVEKLWRQMMKLP
CCCCCHHCCHHHHHHHHHCCCEEECCCCEECCEEEEEEEEEEECCCCCHHHHHHHHHHHH
RDFLQA
HHHHCC
>Mature Secondary Structure
MNLETKWLEDFVALANTRSFSASARQRHVTQPAFSRRIRSLEQAVGATLVDRSTTPIGLT
CCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PEGQLFLVTARSMVEQLSECLAHLRGLSMANEALDIVAAHSLALTFFPHWISRLQKGVGE
CCCCEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPTRLVAMNVGDAIHVLREGNCDLMLAYYDPYASMQLDAEAFPSFSIGQVNMLPVCVPDT
HCCEEEEECCCHHHHHEECCCCCEEEEEECCCCCEEECHHHCCCCCCCCEEEEEEEECCC
DGAPRFSLDDDTAGVPFLAYTQGAFLGRSVRMLLKNDPLRMRLKTVYETAMAEGLKGMAL
CCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEE
QGVGMAWIPDFCIREELASGRLVRAGGTQWDIPLEIRLYRCSLVHKPGVEKLWRQMMKLP
CCCCCHHCCHHHHHHHHHCCCEEECCCCEECCEEEEEEEEEEECCCCCHHHHHHHHHHHH
RDFLQA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]