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The map label for this gene is ycaD [C]

Identifier: 92113944

GI number: 92113944

Start: 2071097

End: 2072431

Strand: Direct

Name: ycaD [C]

Synonym: Csal_1821

Alternate gene names: 92113944

Gene position: 2071097-2072431 (Clockwise)

Preceding gene: 92113938

Following gene: 92113948

Centisome position: 56.03

GC content: 61.12

Gene sequence:

>1335_bases
TTGCGCAGCTTGCCCGCAACCCTTCCCATTCTATTTCTTAGCGAAATCAGTTTCTTGCTTGGCCATGGGCTGATCATGAC
CTTGCTCGGGGTGCGCATGTCGCTGGAGGGGTTCCCCTCCCAGATGGCGGGTTTGCTGATGTCGAGTTTCTCGTTGGGCT
TCGTGATCGGAAGCTATCTGATCGAGAAGCGTATTCGCACGGTGGGGCACATTCGGGTTTTCGCGGCGTGTGCCGCGGTA
CTGGCCGTGACGGCGATGTTGCATGGGCTCTGGGTCAATCCCTGGTCGTGGCTGGTCTGGCGACTGTTCGGGGGCGCAGC
GACCGCGGGGTTGCTGATGGTGATGGAGTCCTGGGTCTCGGGCGAATCGACCAACGACAATCGCGGGCGTGTGCTCGGCT
GGTACCTGGTCATCTCGACATCGTCGTTGGCGCTGGGGCAATGGCTGCTCAATGCCGCCGACCCCGCAACCTTCGTGCTG
TTTTCCGTGTCCGGCATTCTCTTCGCACTGTCGCTGGTGCCCCTGTCGATTTATCGTATCCACGGGCCGACGCGTTCGTC
GCACGATGTCTCGCGCAAGATTTCACTGAAGGAACTGTATCGGCGTGCGCCAGTGGGGCTGGTGAGTGCCTTCACGGCGG
GGCTGATGGTGCAGGCCTTCTTCGCCATGACGCCTTTCTACGGGCAGGAAATCGGTCTGTCGACGTCACAGACCGCGCAA
TTCATGGCCATCACCACGCTGGTCGCGCTGGTGGCGCAGTGGACCCTGGGGCGCATTTCCGATCGTTTCGACCGCCGCAA
GGTGATTCTCTGCATGGCGCTGGTCATGGCCATCTCGGGGGCCATGATCTCGGTCGCGGCGCGTTTCGACTTCTGGGTGC
TGCTGGTGGTGGCCTGCTTCCATACCGCCATGCTGCATACGCTGTATTCCTTGAGCCTGTCGCATACCAACGACTGGCTC
GAGCCGGAGGAAACCATTCAAGCCAACGCCAAGCTCTTGATCTGGTATGGCATCGGTTCGGTGATCGGGCCTTACAGCGC
TTCACTGATCATGGAGCTGACCGGGCCGGACGGGCTGTGGCTTTTCCTGGGCGGCGTGGCGTTGACGCTGGCCATGTTCG
TGATGGTGCGCCTGCACGGCCATCACGGCATTCCCCCGGAAGTCGAGCAGGAGCCCTATGTGGCGGCCGTCCCCATGGTG
GAGTCGACGCACTATCTCAGCGAGATGGATCCGCGTTTCGAACCTCAGCAGTTCGAGCTCGACTTCGAGCCGGATGACGA
AGACTGGTCGTCATATGACGACCACGCCCACGAGTCTCGACACCAAGAAGCCTAG

Upstream 100 bases:

>100_bases
GCCTTAGCAGGTAAACTGACGCCTATCCCCGAAACGCACGTCGCGCATGCCGCAGCGGACATGCCCAAACCCATATTGAC
GTTATCGCCAGGAGGTCGAT

Downstream 100 bases:

>100_bases
GCGCTCAGCTCGCATCGCGTATGAAGCGGCAGGAGGAGTTCCGCGCTGCGTTCGCGGACGCCGGGAAGGCGCTTCTGCAC
CAGCGAGAATCCGCCGGTGA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MRSLPATLPILFLSEISFLLGHGLIMTLLGVRMSLEGFPSQMAGLLMSSFSLGFVIGSYLIEKRIRTVGHIRVFAACAAV
LAVTAMLHGLWVNPWSWLVWRLFGGAATAGLLMVMESWVSGESTNDNRGRVLGWYLVISTSSLALGQWLLNAADPATFVL
FSVSGILFALSLVPLSIYRIHGPTRSSHDVSRKISLKELYRRAPVGLVSAFTAGLMVQAFFAMTPFYGQEIGLSTSQTAQ
FMAITTLVALVAQWTLGRISDRFDRRKVILCMALVMAISGAMISVAARFDFWVLLVVACFHTAMLHTLYSLSLSHTNDWL
EPEETIQANAKLLIWYGIGSVIGPYSASLIMELTGPDGLWLFLGGVALTLAMFVMVRLHGHHGIPPEVEQEPYVAAVPMV
ESTHYLSEMDPRFEPQQFELDFEPDDEDWSSYDDHAHESRHQEA

Sequences:

>Translated_444_residues
MRSLPATLPILFLSEISFLLGHGLIMTLLGVRMSLEGFPSQMAGLLMSSFSLGFVIGSYLIEKRIRTVGHIRVFAACAAV
LAVTAMLHGLWVNPWSWLVWRLFGGAATAGLLMVMESWVSGESTNDNRGRVLGWYLVISTSSLALGQWLLNAADPATFVL
FSVSGILFALSLVPLSIYRIHGPTRSSHDVSRKISLKELYRRAPVGLVSAFTAGLMVQAFFAMTPFYGQEIGLSTSQTAQ
FMAITTLVALVAQWTLGRISDRFDRRKVILCMALVMAISGAMISVAARFDFWVLLVVACFHTAMLHTLYSLSLSHTNDWL
EPEETIQANAKLLIWYGIGSVIGPYSASLIMELTGPDGLWLFLGGVALTLAMFVMVRLHGHHGIPPEVEQEPYVAAVPMV
ESTHYLSEMDPRFEPQQFELDFEPDDEDWSSYDDHAHESRHQEA
>Mature_444_residues
MRSLPATLPILFLSEISFLLGHGLIMTLLGVRMSLEGFPSQMAGLLMSSFSLGFVIGSYLIEKRIRTVGHIRVFAACAAV
LAVTAMLHGLWVNPWSWLVWRLFGGAATAGLLMVMESWVSGESTNDNRGRVLGWYLVISTSSLALGQWLLNAADPATFVL
FSVSGILFALSLVPLSIYRIHGPTRSSHDVSRKISLKELYRRAPVGLVSAFTAGLMVQAFFAMTPFYGQEIGLSTSQTAQ
FMAITTLVALVAQWTLGRISDRFDRRKVILCMALVMAISGAMISVAARFDFWVLLVVACFHTAMLHTLYSLSLSHTNDWL
EPEETIQANAKLLIWYGIGSVIGPYSASLIMELTGPDGLWLFLGGVALTLAMFVMVRLHGHHGIPPEVEQEPYVAAVPMV
ESTHYLSEMDPRFEPQQFELDFEPDDEDWSSYDDHAHESRHQEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=361, Percent_Identity=26.5927977839335, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 49093; Mature: 49093

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLPATLPILFLSEISFLLGHGLIMTLLGVRMSLEGFPSQMAGLLMSSFSLGFVIGSYL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IEKRIRTVGHIRVFAACAAVLAVTAMLHGLWVNPWSWLVWRLFGGAATAGLLMVMESWVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GESTNDNRGRVLGWYLVISTSSLALGQWLLNAADPATFVLFSVSGILFALSLVPLSIYRI
CCCCCCCCCCEEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
HGPTRSSHDVSRKISLKELYRRAPVGLVSAFTAGLMVQAFFAMTPFYGQEIGLSTSQTAQ
CCCCCCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FMAITTLVALVAQWTLGRISDRFDRRKVILCMALVMAISGAMISVAARFDFWVLLVVACF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
HTAMLHTLYSLSLSHTNDWLEPEETIQANAKLLIWYGIGSVIGPYSASLIMELTGPDGLW
HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEECCHHHHCCCCCEEEEEECCCCCHH
LFLGGVALTLAMFVMVRLHGHHGIPPEVEQEPYVAAVPMVESTHYLSEMDPRFEPQQFEL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEE
DFEPDDEDWSSYDDHAHESRHQEA
CCCCCCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRSLPATLPILFLSEISFLLGHGLIMTLLGVRMSLEGFPSQMAGLLMSSFSLGFVIGSYL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
IEKRIRTVGHIRVFAACAAVLAVTAMLHGLWVNPWSWLVWRLFGGAATAGLLMVMESWVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
GESTNDNRGRVLGWYLVISTSSLALGQWLLNAADPATFVLFSVSGILFALSLVPLSIYRI
CCCCCCCCCCEEEEEEEEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEE
HGPTRSSHDVSRKISLKELYRRAPVGLVSAFTAGLMVQAFFAMTPFYGQEIGLSTSQTAQ
CCCCCCCCHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FMAITTLVALVAQWTLGRISDRFDRRKVILCMALVMAISGAMISVAARFDFWVLLVVACF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
HTAMLHTLYSLSLSHTNDWLEPEETIQANAKLLIWYGIGSVIGPYSASLIMELTGPDGLW
HHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEECCHHHHCCCCCEEEEEECCCCCHH
LFLGGVALTLAMFVMVRLHGHHGIPPEVEQEPYVAAVPMVESTHYLSEMDPRFEPQQFEL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEE
DFEPDDEDWSSYDDHAHESRHQEA
CCCCCCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA