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The map label for this gene is oprF [H]

Identifier: 92113921

GI number: 92113921

Start: 2044974

End: 2045858

Strand: Direct

Name: oprF [H]

Synonym: Csal_1798

Alternate gene names: 92113921

Gene position: 2044974-2045858 (Clockwise)

Preceding gene: 92113920

Following gene: 92113922

Centisome position: 55.32

GC content: 61.58

Gene sequence:

>885_bases
ATGAAAAAATCTACGACTGGCTTGCTGCTCGGTTCCGCGTTGGTTGTCGGCCTGTCCGGCTGTGCCAGCTCCGGTACTCA
ATCTTCCTACAACGCTGACGACGATCAGGCTTGGTACAAGTCGCCGTTCGTTTGCGGCTTGGCAGGTGGCTTGATCGGCG
GCGGTATCGGTTACGCCTCGAGCAGCGACTCGGACGAAGATACCGGTGCCGCTCTCGGTGGTGTCGGCGGTGCGACAGCG
GGTGCTTTGCTCTGCGCCGATTATTCCGACAAGGTTGTCGACAGCGACGGCGACGGCGTTCCCGACGATCGCGATCAGTG
CCCCAACACGCCGGCTGGCGTGGCGGTAGACGCGCAGGGCTGCCCGCTGGATAGCGACGGCGACGGCGTGCCGGACTACA
AGGACGAGTGCCCGGGAACGCCGGCAGGTGTCGAAGTCAACGCCAGTGGCTGCCCGCTGGATAGCGACGGCGACGGCGTG
CCGGACTATCAGGACCAGTGCCCGGACACTCCGGCCGGTGCTGAAGTCAACGCGCTTGGCTGTGCCGCCGACCTGGTGCT
GAAGGACGTGAACTTCGAGTTCGATTCCGCCACCCTGACCAGTGAAGCCGAGAACATCCTCGACGACGTGGCAGCGAAGC
TGTCCTCCAACGAAAGCGTCGATGTTCGTCTGGAAGGCTACACCGACTCCGTGGGTAGCGCGTCCTACAACAAAGATCTT
TCTCAGCGTCGTGCCGATTCTGTGAAGGAGTACTTGGTGTCCAAGGGCGTCAACGCCGACAGCATCACCACTTACGGTTA
TGGTGAGCAGAATCCGATCGCCACCAACGAAACTGCCGAAGGTCGTGCTGAAAACCGCCGTGTTGAGCTGGGCGAGCAAG
AATAA

Upstream 100 bases:

>100_bases
AAGGCAAAAATGCCTTCCTCACACCGAGAACCGCTTCTATACTCGGACCCCGCTGGGTAACGTCCCGTTACGCTAGCGCT
GTGTTAAGAAGGAGTCTTAC

Downstream 100 bases:

>100_bases
GCCTAGCCTCACACCGCGATGTGAAGAGGGCGCCTTCGGGCGCCCTCTTTCGTTTGCATGGGCGCGACTGGACGGCGTTT
CACGGGCTTGCTAGTGTGCG

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKKSTTGLLLGSALVVGLSGCASSGTQSSYNADDDQAWYKSPFVCGLAGGLIGGGIGYASSSDSDEDTGAALGGVGGATA
GALLCADYSDKVVDSDGDGVPDDRDQCPNTPAGVAVDAQGCPLDSDGDGVPDYKDECPGTPAGVEVNASGCPLDSDGDGV
PDYQDQCPDTPAGAEVNALGCAADLVLKDVNFEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSVGSASYNKDL
SQRRADSVKEYLVSKGVNADSITTYGYGEQNPIATNETAEGRAENRRVELGEQE

Sequences:

>Translated_294_residues
MKKSTTGLLLGSALVVGLSGCASSGTQSSYNADDDQAWYKSPFVCGLAGGLIGGGIGYASSSDSDEDTGAALGGVGGATA
GALLCADYSDKVVDSDGDGVPDDRDQCPNTPAGVAVDAQGCPLDSDGDGVPDYKDECPGTPAGVEVNASGCPLDSDGDGV
PDYQDQCPDTPAGAEVNALGCAADLVLKDVNFEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSVGSASYNKDL
SQRRADSVKEYLVSKGVNADSITTYGYGEQNPIATNETAEGRAENRRVELGEQE
>Mature_294_residues
MKKSTTGLLLGSALVVGLSGCASSGTQSSYNADDDQAWYKSPFVCGLAGGLIGGGIGYASSSDSDEDTGAALGGVGGATA
GALLCADYSDKVVDSDGDGVPDDRDQCPNTPAGVAVDAQGCPLDSDGDGVPDYKDECPGTPAGVEVNASGCPLDSDGDGV
PDYQDQCPDTPAGAEVNALGCAADLVLKDVNFEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSVGSASYNKDL
SQRRADSVKEYLVSKGVNADSITTYGYGEQNPIATNETAEGRAENRRVELGEQE

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=102, Percent_Identity=49.0196078431373, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787191, Length=113, Percent_Identity=43.3628318584071, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788957, Length=100, Percent_Identity=40, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786962, Length=101, Percent_Identity=38.6138613861386, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 29917; Mature: 29917

Theoretical pI: Translated: 3.65; Mature: 3.65

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00318 HMG_COA_REDUCTASE_2 ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSTTGLLLGSALVVGLSGCASSGTQSSYNADDDQAWYKSPFVCGLAGGLIGGGIGYAS
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCC
SSDSDEDTGAALGGVGGATAGALLCADYSDKVVDSDGDGVPDDRDQCPNTPAGVAVDAQG
CCCCCCHHHHHHCCCCCHHHCEEEEECCCCCEECCCCCCCCCCHHHCCCCCCCEEECCCC
CPLDSDGDGVPDYKDECPGTPAGVEVNASGCPLDSDGDGVPDYQDQCPDTPAGAEVNALG
CCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHH
CAADLVLKDVNFEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSVGSASYNKDL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHH
SQRRADSVKEYLVSKGVNADSITTYGYGEQNPIATNETAEGRAENRRVELGEQE
HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKSTTGLLLGSALVVGLSGCASSGTQSSYNADDDQAWYKSPFVCGLAGGLIGGGIGYAS
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCC
SSDSDEDTGAALGGVGGATAGALLCADYSDKVVDSDGDGVPDDRDQCPNTPAGVAVDAQG
CCCCCCHHHHHHCCCCCHHHCEEEEECCCCCEECCCCCCCCCCHHHCCCCCCCEEECCCC
CPLDSDGDGVPDYKDECPGTPAGVEVNASGCPLDSDGDGVPDYQDQCPDTPAGAEVNALG
CCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHH
CAADLVLKDVNFEFDSATLTSEAENILDDVAAKLSSNESVDVRLEGYTDSVGSASYNKDL
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHH
SQRRADSVKEYLVSKGVNADSITTYGYGEQNPIATNETAEGRAENRRVELGEQE
HHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]