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The map label for this gene is yafC [C]

Identifier: 92113904

GI number: 92113904

Start: 2025483

End: 2026424

Strand: Direct

Name: yafC [C]

Synonym: Csal_1781

Alternate gene names: 92113904

Gene position: 2025483-2026424 (Clockwise)

Preceding gene: 92113899

Following gene: 92113913

Centisome position: 54.79

GC content: 62.42

Gene sequence:

>942_bases
ATGCAGGACCTCAACGATCTCTACTATTTCGTGCAAGTGGTGAAGCATGGCGGCTTTGCACCGGCCGGGCGTGCCCTGGG
CATCCCCAAGTCGAAACTGAGCCGTCGCATCACTCAGCTCGAGGAGCGCCTCGACACTCGTTTGATACATCGCTCCACGC
GGCGTTTTTCGGTCACTGAGCTGGGACAGGCTTACTATCGCCATAGCGTCGCCATGCTGGTGGAGGCAGAAGCCGCCGAG
GAACTCATCCAACGCCATCATGCCGAGCCCCAGGGCACGGTGCGTCTGAGCTGTTCGCCCAGTGTGCTGCACTATCTGAT
CACGCCGCTGCTGGTGCGCTTCATGGCGCGTTGCCCCAAGGTGGAAGTGCAGGTGGAAGCAACCAGCCGACGCGTCGATG
TGATCAAGGAGGGATTCGATCTGGCGATCCGGGTGCGCTTTCCGCCTCTGGAAGACAGCGATCTGACCATGAAAGTGCTT
GCATCGAGTCCCCAGCGGTTGATGGCCGCCCCTTCACTGTTTGCCGAGCGACCGAGGCCACGCAGTCCGGCGGATCTCGT
TGAATTGCCGAGTCTCGATTTCGAGCAGTATGACCACCGTCACTGCTGGGACCTGGTGGGGCCCAACGGCGCCAGTGCAC
AGGTGCCCCATTGGCCGCGTTTGGTCACTGACAGCGCCGAAACCCTGCATGCCGCTGCCCTGGAAGGGCTCGGTGTGGTC
AAGCTGGGGCTGTTGGTAGGCGCGCGGGATATCCAGGAAGGACGCCTGATCGATGTGCTGCCGGGCTGGGAACCCCGGGG
CGGGATCCTGCATGCGGCGTTTCCATCGCGGCGAGGTCTGCTGCCGGCGGTGCGGGCGCTGCTCGACTTTCTGGACGAGC
AGATCGCCGATGAGGACTTCGATACTCAAGAAGCGCTGATCAATTCGTCTCCGCGTGGCTGA

Upstream 100 bases:

>100_bases
GGCGTGTTGTCTCCCGCGATGATGAGAAGTCTATTTAAGGAACGAATGGCCCGGTAGATGCTCATAATAGCACTCAGCGT
TTCAATAATAGGACAGTGGG

Downstream 100 bases:

>100_bases
GGACGCGAAGCGGCAAGAGCATCGCGTCAGCCATCATCCGAGGCCACGCCGAATGCTCCGTGCTCGGCGCGGCAGTGGCG
GCCATCGGCTTCCCGCACCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MQDLNDLYYFVQVVKHGGFAPAGRALGIPKSKLSRRITQLEERLDTRLIHRSTRRFSVTELGQAYYRHSVAMLVEAEAAE
ELIQRHHAEPQGTVRLSCSPSVLHYLITPLLVRFMARCPKVEVQVEATSRRVDVIKEGFDLAIRVRFPPLEDSDLTMKVL
ASSPQRLMAAPSLFAERPRPRSPADLVELPSLDFEQYDHRHCWDLVGPNGASAQVPHWPRLVTDSAETLHAAALEGLGVV
KLGLLVGARDIQEGRLIDVLPGWEPRGGILHAAFPSRRGLLPAVRALLDFLDEQIADEDFDTQEALINSSPRG

Sequences:

>Translated_313_residues
MQDLNDLYYFVQVVKHGGFAPAGRALGIPKSKLSRRITQLEERLDTRLIHRSTRRFSVTELGQAYYRHSVAMLVEAEAAE
ELIQRHHAEPQGTVRLSCSPSVLHYLITPLLVRFMARCPKVEVQVEATSRRVDVIKEGFDLAIRVRFPPLEDSDLTMKVL
ASSPQRLMAAPSLFAERPRPRSPADLVELPSLDFEQYDHRHCWDLVGPNGASAQVPHWPRLVTDSAETLHAAALEGLGVV
KLGLLVGARDIQEGRLIDVLPGWEPRGGILHAAFPSRRGLLPAVRALLDFLDEQIADEDFDTQEALINSSPRG
>Mature_313_residues
MQDLNDLYYFVQVVKHGGFAPAGRALGIPKSKLSRRITQLEERLDTRLIHRSTRRFSVTELGQAYYRHSVAMLVEAEAAE
ELIQRHHAEPQGTVRLSCSPSVLHYLITPLLVRFMARCPKVEVQVEATSRRVDVIKEGFDLAIRVRFPPLEDSDLTMKVL
ASSPQRLMAAPSLFAERPRPRSPADLVELPSLDFEQYDHRHCWDLVGPNGASAQVPHWPRLVTDSAETLHAAALEGLGVV
KLGLLVGARDIQEGRLIDVLPGWEPRGGILHAAFPSRRGLLPAVRALLDFLDEQIADEDFDTQEALINSSPRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=31.0810810810811, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789639, Length=299, Percent_Identity=27.7591973244147, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=29.2929292929293, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=27.1186440677966, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789440, Length=271, Percent_Identity=28.4132841328413, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787128, Length=302, Percent_Identity=25.8278145695364, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=24.6575342465753, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786448, Length=264, Percent_Identity=28.7878787878788, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI157672245, Length=150, Percent_Identity=29.3333333333333, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787601, Length=227, Percent_Identity=25.5506607929515, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789173, Length=258, Percent_Identity=26.3565891472868, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=143, Percent_Identity=30.7692307692308, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34950; Mature: 34950

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDLNDLYYFVQVVKHGGFAPAGRALGIPKSKLSRRITQLEERLDTRLIHRSTRRFSVTE
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LGQAYYRHSVAMLVEAEAAEELIQRHHAEPQGTVRLSCSPSVLHYLITPLLVRFMARCPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVQVEATSRRVDVIKEGFDLAIRVRFPPLEDSDLTMKVLASSPQRLMAAPSLFAERPRP
EEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHCHHHHHCCCCC
RSPADLVELPSLDFEQYDHRHCWDLVGPNGASAQVPHWPRLVTDSAETLHAAALEGLGVV
CCCHHHHHCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHH
KLGLLVGARDIQEGRLIDVLPGWEPRGGILHAAFPSRRGLLPAVRALLDFLDEQIADEDF
HHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
DTQEALINSSPRG
CHHHHHHCCCCCC
>Mature Secondary Structure
MQDLNDLYYFVQVVKHGGFAPAGRALGIPKSKLSRRITQLEERLDTRLIHRSTRRFSVTE
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
LGQAYYRHSVAMLVEAEAAEELIQRHHAEPQGTVRLSCSPSVLHYLITPLLVRFMARCPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCC
VEVQVEATSRRVDVIKEGFDLAIRVRFPPLEDSDLTMKVLASSPQRLMAAPSLFAERPRP
EEEEEECCHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHCCCHHHHHCHHHHHCCCCC
RSPADLVELPSLDFEQYDHRHCWDLVGPNGASAQVPHWPRLVTDSAETLHAAALEGLGVV
CCCHHHHHCCCCCHHHCCCHHHHHCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHH
KLGLLVGARDIQEGRLIDVLPGWEPRGGILHAAFPSRRGLLPAVRALLDFLDEQIADEDF
HHHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCC
DTQEALINSSPRG
CHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]