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The map label for this gene is cmpR [H]

Identifier: 92113827

GI number: 92113827

Start: 1936574

End: 1937497

Strand: Direct

Name: cmpR [H]

Synonym: Csal_1704

Alternate gene names: 92113827

Gene position: 1936574-1937497 (Clockwise)

Preceding gene: 92113826

Following gene: 92113828

Centisome position: 52.39

GC content: 66.34

Gene sequence:

>924_bases
ATGGATATCCCCCACCAGCGGCTAGTGTACTTCCAGGTAACGATCGAGGCGGGCTCGGTGCGTCAGGCGGCGGCGCGGCT
GGACATTGCGCCGTCGGCGGTCAGTCGTCAGCTTTCCTTGATCGAGGAGGCGCTGGGCGCGCCGCTGCTGGAGCGCTCGC
GGCAAGGCGTGGTGCCGACACCGGTGGGGGAGATGTTGCTGGATTACTGCCGCAAGCGCGCGGCACTCGACGATCGTTTC
AGCGAGACGCTGGATGCCTACCAGCGGCTGGAAACCGGTCATCTCTCGCTGACGGTCGGGGAAGGCTTCGTCGGGGATCT
GCTCGATACGCCGTTGCGCACCTTTACCGAGCGCTATCGTGGGGTGCGCCTGGATGTGAACACCGGCAGTACCAGCGACA
TCATCGAAGCGGTGGTCGAGGACGAGGCCCATATCGGCTTGATGTACCACGAGCGGCTGCATCCGCAACTGCGTTTCTGG
CATTCCAGCCGTCAGCCGTTGGTGGCGTTGATGTCGCCCTCGCATCCCCTGGCGGCTGTCGAGAACGAACTGCCTCTCGC
CACGCTCAGCGAGCATCCCATGGCGTTGTGGCGCACCGGCCACGGAGTGCGTCAGCTGGTCGACGAGGGCTTTCGCGAGG
CGGGGCTGGGGCAGCACGTCACGATGCAGACCAACTCGCTTTCGGTGCTGCTGCATGCGGCCAGGTCGGAGCTCACCCTC
ACGCTGCTGCCGGCCTTCGCGGCCGCCCGGGAGCTGGAGGACGGGGCGCTGGTGGCGCGTGCCGTCGATTGCGAACGCTT
TCGCCAGGCGCATGCGCACATCATCACCCGGGTGGGGCGGCGCATGCCGAAGGCGGGGCTGCAGCTGTTGCGCCACCTGG
AGCGCTGGATGCGGGCGTTCAAATCAAGGCTAGTTTCGGGTTGA

Upstream 100 bases:

>100_bases
TCTGGGGCGGGCGTCGGTGCCAGCGTGGCGGTGACGGCGATGCCTGACACTGAGATACTGTCGTTTGCGTTCCGTCAGGC
AACCGATCGGGCTGTGAGCA

Downstream 100 bases:

>100_bases
AAAGTGGACGCGCTCGGTCATACGGCGTTGCACAATGAACTTTCATGCGAGTCAAATTTGTCTTTGGGTCAATTATGGTT
TTCTATACTAGCGGCAAGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDIPHQRLVYFQVTIEAGSVRQAAARLDIAPSAVSRQLSLIEEALGAPLLERSRQGVVPTPVGEMLLDYCRKRAALDDRF
SETLDAYQRLETGHLSLTVGEGFVGDLLDTPLRTFTERYRGVRLDVNTGSTSDIIEAVVEDEAHIGLMYHERLHPQLRFW
HSSRQPLVALMSPSHPLAAVENELPLATLSEHPMALWRTGHGVRQLVDEGFREAGLGQHVTMQTNSLSVLLHAARSELTL
TLLPAFAAARELEDGALVARAVDCERFRQAHAHIITRVGRRMPKAGLQLLRHLERWMRAFKSRLVSG

Sequences:

>Translated_307_residues
MDIPHQRLVYFQVTIEAGSVRQAAARLDIAPSAVSRQLSLIEEALGAPLLERSRQGVVPTPVGEMLLDYCRKRAALDDRF
SETLDAYQRLETGHLSLTVGEGFVGDLLDTPLRTFTERYRGVRLDVNTGSTSDIIEAVVEDEAHIGLMYHERLHPQLRFW
HSSRQPLVALMSPSHPLAAVENELPLATLSEHPMALWRTGHGVRQLVDEGFREAGLGQHVTMQTNSLSVLLHAARSELTL
TLLPAFAAARELEDGALVARAVDCERFRQAHAHIITRVGRRMPKAGLQLLRHLERWMRAFKSRLVSG
>Mature_307_residues
MDIPHQRLVYFQVTIEAGSVRQAAARLDIAPSAVSRQLSLIEEALGAPLLERSRQGVVPTPVGEMLLDYCRKRAALDDRF
SETLDAYQRLETGHLSLTVGEGFVGDLLDTPLRTFTERYRGVRLDVNTGSTSDIIEAVVEDEAHIGLMYHERLHPQLRFW
HSSRQPLVALMSPSHPLAAVENELPLATLSEHPMALWRTGHGVRQLVDEGFREAGLGQHVTMQTNSLSVLLHAARSELTL
TLLPAFAAARELEDGALVARAVDCERFRQAHAHIITRVGRRMPKAGLQLLRHLERWMRAFKSRLVSG

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=241, Percent_Identity=26.9709543568465, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787879, Length=249, Percent_Identity=26.5060240963855, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=243, Percent_Identity=25.1028806584362, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789204, Length=253, Percent_Identity=26.4822134387352, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082132, Length=266, Percent_Identity=23.6842105263158, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34291; Mature: 34291

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIPHQRLVYFQVTIEAGSVRQAAARLDIAPSAVSRQLSLIEEALGAPLLERSRQGVVPT
CCCCCCEEEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
PVGEMLLDYCRKRAALDDRFSETLDAYQRLETGHLSLTVGEGFVGDLLDTPLRTFTERYR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
GVRLDVNTGSTSDIIEAVVEDEAHIGLMYHERLHPQLRFWHSSRQPLVALMSPSHPLAAV
CEEEEECCCCHHHHHHHHHCCCCCEEHHHHHHHCHHHHHHCCCCCCEEEEECCCCCHHHH
ENELPLATLSEHPMALWRTGHGVRQLVDEGFREAGLGQHVTMQTNSLSVLLHAARSELTL
CCCCCCHHHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHEE
TLLPAFAAARELEDGALVARAVDCERFRQAHAHIITRVGRRMPKAGLQLLRHLERWMRAF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
KSRLVSG
HHHHCCC
>Mature Secondary Structure
MDIPHQRLVYFQVTIEAGSVRQAAARLDIAPSAVSRQLSLIEEALGAPLLERSRQGVVPT
CCCCCCEEEEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC
PVGEMLLDYCRKRAALDDRFSETLDAYQRLETGHLSLTVGEGFVGDLLDTPLRTFTERYR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHC
GVRLDVNTGSTSDIIEAVVEDEAHIGLMYHERLHPQLRFWHSSRQPLVALMSPSHPLAAV
CEEEEECCCCHHHHHHHHHCCCCCEEHHHHHHHCHHHHHHCCCCCCEEEEECCCCCHHHH
ENELPLATLSEHPMALWRTGHGVRQLVDEGFREAGLGQHVTMQTNSLSVLLHAARSELTL
CCCCCCHHHCCCCHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHEE
TLLPAFAAARELEDGALVARAVDCERFRQAHAHIITRVGRRMPKAGLQLLRHLERWMRAF
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
KSRLVSG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]