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The map label for this gene is hofB [C]

Identifier: 92113783

GI number: 92113783

Start: 1887948

End: 1889174

Strand: Direct

Name: hofB [C]

Synonym: Csal_1659

Alternate gene names: 92113783

Gene position: 1887948-1889174 (Clockwise)

Preceding gene: 92113782

Following gene: 92113784

Centisome position: 51.07

GC content: 67.64

Gene sequence:

>1227_bases
ATGGCACTGCCACGTTTTGGACAACGTCACCTGCACGTCGTCGCCGACCCCGACGACCCGGCCTTCAAGTCGGAGCTGCA
CCGCAGCGTCATCGAGCGTTTCGAGGACGAAGGCATGGAACTCGACGCCGAACCCAGCGCGCTGTACACGCGCCTGGAAG
ACTGCGTCCGCGACTGGCTTGCCGAGCGCGGCGAGTTCCTGCCCGACGAGGCCATGCACACGGTCCTGCAATCGCTGTAC
CACGAAATGACCGGCTACGGCCCGCTGCAACCTCTGCTGCGGGACGACGACATCACCGACATACTCATCAACGGCCCCGA
TCACGTGTTCGCCGAGCGCAACGGCAGGCTCGAGCGCGTGCCCCAGCAGTTCCTCAACGACGCCCACGTGCTGCGCGTGG
TACGCCGCATGCTGGCGCCGCTGGGCCGCCGCCTGGATGAATCCAGCCCCATGGTCGACGCCCGCCTGGCGGACGGCTCG
CGGGTCAATGCCATCATCCCGCCGCTGGCGCTGGATGGCCCCTGCGTCTCGATCCGCAAGTTCCGTCACGACGCCATGAG
CGCGCTGGCGCTGGTCGAACGCGGCGCCTTGCCGGCGGACCTGCTCGGCGAGCTGGAGCAGGCCGTGGAGCGCCGCCGCA
ACATCCTGATCAGCGGCGCCACCGGGGCAGGCAAGACCACCTTGCTCAATGCCCTGAGCCAGTCGATTCCCCGTCACGAA
CGCGTGGTCACCATCGAGGACGCCGCCGAACTGCAACTGCGCAACAACCACATCGTGCGGCTCGAGACACGCCCCGCCAA
TACCGAGGGTGAGGGCGAGATCACCGCCCGCCAGCTGGTGCGCAACGCGCTGCGCATGCGTCCCGACCGGGTGATTCTCG
GCGAGAGCCGTGGCGACGAAGTGCTCGACGTGCTGCAGGCCATGAACACCGGCCACCTGGGCTCGATGAGTACCGTTCAC
GCCAACGCCGCCGCCGACGCCCTGGTGCGCCTGCAGATGATGGTGCGGCTCTCGGGCTTCCAGGGTTCGGACACCCTGAT
CAACCGCATCATCGCCACCGCGCTGGACCTGGTGGTGCACGTCACGCGTGACGTCAATGGCCACCGCCACGTGCTCGAAG
TGCAGCGGGTGGTGGGCTTCGACGATGACACCATCAAGCTCGAGACGCTCTATCACCGCGACGAGGCCCCCTGGACCCAC
GTCGCCAACGCCAGGGTGCGGGCATGA

Upstream 100 bases:

>100_bases
CCAGGGAAGGGGGGACAGCGCCCTCGCCAGGCTTGCCACCGGGACAGCACATCAGGGCAACGCGGAACGAGCGAGCGGAA
TTTCCGCCAGGAGAAACACC

Downstream 100 bases:

>100_bases
CCCTGTGGTGGGGCGTCGCCATCATCCTGCTGCTGGCCGCCGCCGCGCTGCTCTGGGTCAGCGCGCGGGTCTCCACGACG
CCGCACGAGCAGCGTGCGCC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MALPRFGQRHLHVVADPDDPAFKSELHRSVIERFEDEGMELDAEPSALYTRLEDCVRDWLAERGEFLPDEAMHTVLQSLY
HEMTGYGPLQPLLRDDDITDILINGPDHVFAERNGRLERVPQQFLNDAHVLRVVRRMLAPLGRRLDESSPMVDARLADGS
RVNAIIPPLALDGPCVSIRKFRHDAMSALALVERGALPADLLGELEQAVERRRNILISGATGAGKTTLLNALSQSIPRHE
RVVTIEDAAELQLRNNHIVRLETRPANTEGEGEITARQLVRNALRMRPDRVILGESRGDEVLDVLQAMNTGHLGSMSTVH
ANAAADALVRLQMMVRLSGFQGSDTLINRIIATALDLVVHVTRDVNGHRHVLEVQRVVGFDDDTIKLETLYHRDEAPWTH
VANARVRA

Sequences:

>Translated_408_residues
MALPRFGQRHLHVVADPDDPAFKSELHRSVIERFEDEGMELDAEPSALYTRLEDCVRDWLAERGEFLPDEAMHTVLQSLY
HEMTGYGPLQPLLRDDDITDILINGPDHVFAERNGRLERVPQQFLNDAHVLRVVRRMLAPLGRRLDESSPMVDARLADGS
RVNAIIPPLALDGPCVSIRKFRHDAMSALALVERGALPADLLGELEQAVERRRNILISGATGAGKTTLLNALSQSIPRHE
RVVTIEDAAELQLRNNHIVRLETRPANTEGEGEITARQLVRNALRMRPDRVILGESRGDEVLDVLQAMNTGHLGSMSTVH
ANAAADALVRLQMMVRLSGFQGSDTLINRIIATALDLVVHVTRDVNGHRHVLEVQRVVGFDDDTIKLETLYHRDEAPWTH
VANARVRA
>Mature_407_residues
ALPRFGQRHLHVVADPDDPAFKSELHRSVIERFEDEGMELDAEPSALYTRLEDCVRDWLAERGEFLPDEAMHTVLQSLYH
EMTGYGPLQPLLRDDDITDILINGPDHVFAERNGRLERVPQQFLNDAHVLRVVRRMLAPLGRRLDESSPMVDARLADGSR
VNAIIPPLALDGPCVSIRKFRHDAMSALALVERGALPADLLGELEQAVERRRNILISGATGAGKTTLLNALSQSIPRHER
VVTIEDAAELQLRNNHIVRLETRPANTEGEGEITARQLVRNALRMRPDRVILGESRGDEVLDVLQAMNTGHLGSMSTVHA
NAAADALVRLQMMVRLSGFQGSDTLINRIIATALDLVVHVTRDVNGHRHVLEVQRVVGFDDDTIKLETLYHRDEAPWTHV
ANARVRA

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=122, Percent_Identity=32.7868852459016, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 45593; Mature: 45461

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPRFGQRHLHVVADPDDPAFKSELHRSVIERFEDEGMELDAEPSALYTRLEDCVRDWL
CCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AERGEFLPDEAMHTVLQSLYHEMTGYGPLQPLLRDDDITDILINGPDHVFAERNGRLERV
HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCHHHHCCCCCHHHH
PQQFLNDAHVLRVVRRMLAPLGRRLDESSPMVDARLADGSRVNAIIPPLALDGPCVSIRK
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHH
FRHDAMSALALVERGALPADLLGELEQAVERRRNILISGATGAGKTTLLNALSQSIPRHE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHCCCCC
RVVTIEDAAELQLRNNHIVRLETRPANTEGEGEITARQLVRNALRMRPDRVILGESRGDE
CEEEECCHHHHEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHH
VLDVLQAMNTGHLGSMSTVHANAAADALVRLQMMVRLSGFQGSDTLINRIIATALDLVVH
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VTRDVNGHRHVLEVQRVVGFDDDTIKLETLYHRDEAPWTHVANARVRA
HHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCC
>Mature Secondary Structure 
ALPRFGQRHLHVVADPDDPAFKSELHRSVIERFEDEGMELDAEPSALYTRLEDCVRDWL
CCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
AERGEFLPDEAMHTVLQSLYHEMTGYGPLQPLLRDDDITDILINGPDHVFAERNGRLERV
HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCHHHHCCCCCHHHH
PQQFLNDAHVLRVVRRMLAPLGRRLDESSPMVDARLADGSRVNAIIPPLALDGPCVSIRK
HHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCCCCCHHHHHH
FRHDAMSALALVERGALPADLLGELEQAVERRRNILISGATGAGKTTLLNALSQSIPRHE
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHHCCCCC
RVVTIEDAAELQLRNNHIVRLETRPANTEGEGEITARQLVRNALRMRPDRVILGESRGDE
CEEEECCHHHHEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHH
VLDVLQAMNTGHLGSMSTVHANAAADALVRLQMMVRLSGFQGSDTLINRIIATALDLVVH
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VTRDVNGHRHVLEVQRVVGFDDDTIKLETLYHRDEAPWTHVANARVRA
HHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]