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The map label for this gene is hofQ [C]

Identifier: 92113782

GI number: 92113782

Start: 1886332

End: 1887783

Strand: Direct

Name: hofQ [C]

Synonym: Csal_1658

Alternate gene names: 92113782

Gene position: 1886332-1887783 (Clockwise)

Preceding gene: 92113781

Following gene: 92113783

Centisome position: 51.03

GC content: 68.46

Gene sequence:

>1452_bases
ATGTCCGAGACCGCAACCTCGACCGTTGGGCGACGTCCGGTGTCTGGGGGCCCAGTACCTGGTAGACAAGCCCCAGGTAG
ACAAGCCCCTGGTAGACGAGTACCCGGAAGGCCGCTACCTGGGAGCCTGGTACGCAGCCTGCTGAGCCTCGTATTGCTGC
TGTTCGCGGTGCCCGGGCTCGCCCAGCAGGGCGAGAGCACGCTGCGTCTGGACATCGGCGACCAGCAACGGCTCGTCTTC
GAGCGGCCGGTATCACGTACCGCGCTGGGCGACGGCGACATCGCCAGCGCGCAGATGGTGGACGCCCGCCAACTGCTGCT
CACCGGTCTCGCGGCGGGCACCACCTCGCTGAGCGTCTGGCGGGACGGCCGCGATGCACCGCAGCGCTACCGTGTCTCGG
TACGCCCGCGCGGCGCACGGGGCATGGAGTCCGAATACACCCTGGCCGACGGCACCGACACCCCGACCCTCGCGGGGGAG
AGTGAGTCCCTGGCGCGTCACGCCCAGGCACGCTCGCGCCTCGGCGATCAGAACACCGTGGACGCCACCCGCCAGACGGG
CCCGGTGCAGGTGCAGACCGACATCCGCGTGGTCGAGGTCAACCGCAGCAAGCTGCAGTCCGCCGGCTTCTTCTTCGGCA
AGAACAACGGCGGCAACACTCTGATCGGGGTCGGCACCAGCGGCGCCCTGGGCGGTGCCGAAGCCGTGGGCGACAGCTTC
AGCGAGGGCTTTTCCTTTCTCACCGGCTCCGGCTTCCAGACCGGCAACGGCGGCTACAACATCGTCGTCGGCAACGCCAA
CGACAGCGTGCTGGGCGTGATCAGCGCGCTGCGCAGCAACGGTTTCGCCTACACCCTGGCCGAACCCAGCCTGGTCACGC
TCTCCGGGCAGAGCGCCTCCTTCCTGGCCGGGGGCGAGTTCCCGTTCCCCGTGAGCAACGACGACGGCGACGTGCGCATC
GACTTCAAGGAATTCGGCGTGCGCCTGCAGCTCACGCCCACCGTGCTAGACAGCAACAGCATCATGCTCAAGGTCGCCCC
CGAAGTCAGCGAGCTCGACTTCACCCAGGGCGTGGAGGCCAGCGGCGTGGCCGTGCCCGCCCTCAACGTGCGGCGCACCG
ACACCAGCGTCCAGCTCGGCGACGGCGAAAGCCTGATCATCAGCGGCCTGGTCAGCAACAGCACCATGCAGACCGTGGAC
AAGTTCCCCGGCCTGGGCGATCTGCCGGTCATCGGCGCGTTCTTTCGCTCCACGCGCTTCGAGACCCAGAACAAGGAACT
GGTGATGATCGTCACGCCGCATCTGGTGGCGCCGATGGCGGCGGGCGCCCCCCGGCCGGAACTGCCCGGCGAGGCCCTGC
GGCGCTACGACCCCTCGTATCTGGAACTGCTGTTCGACCCCCAGGACGCCGAAAGCCTCGAGCGCCTGGGCAACGTCGGT
TTCAGCAACTAG

Upstream 100 bases:

>100_bases
GCCACAAGCGGTGGGACAACCGCAGACGCGATAACGACAAGCACGGCCGCAAGCCGGGAACGCCGAGCGCCGTGCCCACG
TAGGGAAGAAGGAAACCGCA

Downstream 100 bases:

>100_bases
CGATCGGTGAGCCGGGGGCAAGACGTCGCGAGGGTGTTTTGCCAGGGATGGCAAATGTAGCACCCCAGGGAAGGGGGGAC
AGCGCCCTCGCCAGGCTTGC

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MSETATSTVGRRPVSGGPVPGRQAPGRQAPGRRVPGRPLPGSLVRSLLSLVLLLFAVPGLAQQGESTLRLDIGDQQRLVF
ERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVWRDGRDAPQRYRVSVRPRGARGMESEYTLADGTDTPTLAGE
SESLARHAQARSRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSF
SEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSASFLAGGEFPFPVSNDDGDVRI
DFKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVD
KFPGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLELLFDPQDAESLERLGNVG
FSN

Sequences:

>Translated_483_residues
MSETATSTVGRRPVSGGPVPGRQAPGRQAPGRRVPGRPLPGSLVRSLLSLVLLLFAVPGLAQQGESTLRLDIGDQQRLVF
ERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVWRDGRDAPQRYRVSVRPRGARGMESEYTLADGTDTPTLAGE
SESLARHAQARSRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSF
SEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSASFLAGGEFPFPVSNDDGDVRI
DFKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVD
KFPGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLELLFDPQDAESLERLGNVG
FSN
>Mature_482_residues
SETATSTVGRRPVSGGPVPGRQAPGRQAPGRRVPGRPLPGSLVRSLLSLVLLLFAVPGLAQQGESTLRLDIGDQQRLVFE
RPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVWRDGRDAPQRYRVSVRPRGARGMESEYTLADGTDTPTLAGES
ESLARHAQARSRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSFS
EGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSASFLAGGEFPFPVSNDDGDVRID
FKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDK
FPGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLELLFDPQDAESLERLGNVGF
SN

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=250, Percent_Identity=28.8, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082242, Length=169, Percent_Identity=30.1775147928994, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50895; Mature: 50764

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETATSTVGRRPVSGGPVPGRQAPGRQAPGRRVPGRPLPGSLVRSLLSLVLLLFAVPGL
CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
AQQGESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVW
CCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
RDGRDAPQRYRVSVRPRGARGMESEYTLADGTDTPTLAGESESLARHAQARSRLGDQNTV
CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
DATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSF
CHHCCCCCEEEEECEEEEECCHHHHHHCCEEEECCCCCCEEEEECCCCCCCCHHHHCCCH
SEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSAS
HHCHHHHCCCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCEEEEECCCCE
FLAGGEFPFPVSNDDGDVRIDFKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEA
EEECCCCCCCCCCCCCCEEEEHHHHCEEEEEEEEEECCCCEEEEECCCHHHCHHHCCCCC
SGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDKFPGLGDLPVIGAFFRSTRF
CCEEECCEEEEECCCEEEECCCCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCC
ETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLELLFDPQDAESLERLGNVG
CCCCCCEEEEECCHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC
FSN
CCC
>Mature Secondary Structure 
SETATSTVGRRPVSGGPVPGRQAPGRQAPGRRVPGRPLPGSLVRSLLSLVLLLFAVPGL
CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
AQQGESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVW
CCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
RDGRDAPQRYRVSVRPRGARGMESEYTLADGTDTPTLAGESESLARHAQARSRLGDQNTV
CCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
DATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNGGNTLIGVGTSGALGGAEAVGDSF
CHHCCCCCEEEEECEEEEECCHHHHHHCCEEEECCCCCCEEEEECCCCCCCCHHHHCCCH
SEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISALRSNGFAYTLAEPSLVTLSGQSAS
HHCHHHHCCCCEECCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCEEEEECCCCE
FLAGGEFPFPVSNDDGDVRIDFKEFGVRLQLTPTVLDSNSIMLKVAPEVSELDFTQGVEA
EEECCCCCCCCCCCCCCEEEEHHHHCEEEEEEEEEECCCCEEEEECCCHHHCHHHCCCCC
SGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTMQTVDKFPGLGDLPVIGAFFRSTRF
CCEEECCEEEEECCCEEEECCCCEEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHCC
ETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRYDPSYLELLFDPQDAESLERLGNVG
CCCCCCEEEEECCHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC
FSN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]