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The map label for this gene is ycfH [H]

Identifier: 92113733

GI number: 92113733

Start: 1828631

End: 1829458

Strand: Direct

Name: ycfH [H]

Synonym: Csal_1609

Alternate gene names: 92113733

Gene position: 1828631-1829458 (Clockwise)

Preceding gene: 92113732

Following gene: 92113734

Centisome position: 49.47

GC content: 66.18

Gene sequence:

>828_bases
ATGTTCGTTGATTCCCATTGTCACCTCGACCGACTCGATCTCGCCGCCCATGACGGCCAGCTCGCCACTGCCCTGGACGC
CGCGCGCCAACGGGGCGTGCGTCAGTTCCTGGCGATCGCCGTCACGCTGGACGACGTGCCCGGGCTGGTCGATATCGCCC
GTGCCCACGACGATGTGACCTTTTCCGCCGGCGTGCACCCCCTGCATACGGTGCCGGACGAACCCGACACCCAGGCCATC
GTCGCCTGCGCCGAACGCCATGGGGCGGTGGCCATCGGCGAGACGGGACTGGATTATCACTACGACGGCGTCGCCCACGA
CGTCCAGTATGCTCGCTTCGCCAACCATCTGCGTGCGGCTCGCGAGCTCGCGTTGCCGGTGATCGTGCACACGCGTGACG
CCAAGGAAGACACCCTGGCGCTGATCCGCGAGCATACCGACCCGGCGGTGGGAGGCGTGCTGCATTGCTTCACCGAGGAC
CTCGACATGGCGCGGGAAGCGATAAGGCTGGGGTTCTATATTTCCCTCTCCGGTATCGTCACTTTCCGCAATGCCACCGC
CGTGCGTGAATTGGCGCGCCGCATTCCGCTCGACCGTCTGCTGATCGAGACGGACAGCCCCTACCTGGCGCCGGTACCGC
ATCGCGGCAAGCCCAACGAGCCGCAATGGGTGGTGGAAGTCGCCGAGTGCATCGCCGCCGAGCGCGGGATCAGCGTCGAC
GAAGTGGCGATGCAGACCACCGCCAACTTTTATCGGCTGTTTCGCGAGGCATTGCCCGAGGCCCCGGAAGACGTGCGCGA
GGCGCTGACGCACCTGACCGGCCAGTAA

Upstream 100 bases:

>100_bases
CGAGGCGTGTCTCGACGGTGTCACGCCGACGCGTCCCAGCTATACCCTTTGATTCATGCCGCGGGCCGTGTGCCGGCCCG
TTCGATCGTTTAGGTACCCC

Downstream 100 bases:

>100_bases
TGCCATGCACGAGGAGGCAGCATGTCACTTGAGTCGATTACCGCACACCTCGAGGCATCGCAGGCGAGCGAGATCCCGCC
CCTCGACCGCTGGGATCCGC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MFVDSHCHLDRLDLAAHDGQLATALDAARQRGVRQFLAIAVTLDDVPGLVDIARAHDDVTFSAGVHPLHTVPDEPDTQAI
VACAERHGAVAIGETGLDYHYDGVAHDVQYARFANHLRAARELALPVIVHTRDAKEDTLALIREHTDPAVGGVLHCFTED
LDMAREAIRLGFYISLSGIVTFRNATAVRELARRIPLDRLLIETDSPYLAPVPHRGKPNEPQWVVEVAECIAAERGISVD
EVAMQTTANFYRLFREALPEAPEDVREALTHLTGQ

Sequences:

>Translated_275_residues
MFVDSHCHLDRLDLAAHDGQLATALDAARQRGVRQFLAIAVTLDDVPGLVDIARAHDDVTFSAGVHPLHTVPDEPDTQAI
VACAERHGAVAIGETGLDYHYDGVAHDVQYARFANHLRAARELALPVIVHTRDAKEDTLALIREHTDPAVGGVLHCFTED
LDMAREAIRLGFYISLSGIVTFRNATAVRELARRIPLDRLLIETDSPYLAPVPHRGKPNEPQWVVEVAECIAAERGISVD
EVAMQTTANFYRLFREALPEAPEDVREALTHLTGQ
>Mature_275_residues
MFVDSHCHLDRLDLAAHDGQLATALDAARQRGVRQFLAIAVTLDDVPGLVDIARAHDDVTFSAGVHPLHTVPDEPDTQAI
VACAERHGAVAIGETGLDYHYDGVAHDVQYARFANHLRAARELALPVIVHTRDAKEDTLALIREHTDPAVGGVLHCFTED
LDMAREAIRLGFYISLSGIVTFRNATAVRELARRIPLDRLLIETDSPYLAPVPHRGKPNEPQWVVEVAECIAAERGISVD
EVAMQTTANFYRLFREALPEAPEDVREALTHLTGQ

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=30.2238805970149, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=30.2238805970149, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI226061853, Length=273, Percent_Identity=29.6703296703297, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI225903424, Length=219, Percent_Identity=27.8538812785388, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=29.3436293436293, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI14042943, Length=271, Percent_Identity=24.7232472324723, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI225903439, Length=243, Percent_Identity=25.1028806584362, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI226061595, Length=229, Percent_Identity=27.0742358078603, Blast_Score=72, Evalue=6e-13,
Organism=Escherichia coli, GI1787342, Length=254, Percent_Identity=51.9685039370079, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI48994985, Length=243, Percent_Identity=35.3909465020576, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=29.296875, Blast_Score=110, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17559024, Length=269, Percent_Identity=28.996282527881, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17543026, Length=192, Percent_Identity=28.125, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565396, Length=190, Percent_Identity=28.9473684210526, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24648690, Length=266, Percent_Identity=30.4511278195489, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24586117, Length=210, Percent_Identity=30, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI221330018, Length=210, Percent_Identity=30, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30263; Mature: 30263

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVDSHCHLDRLDLAAHDGQLATALDAARQRGVRQFLAIAVTLDDVPGLVDIARAHDDVT
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCEE
FSAGVHPLHTVPDEPDTQAIVACAERHGAVAIGETGLDYHYDGVAHDVQYARFANHLRAA
EECCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
RELALPVIVHTRDAKEDTLALIREHTDPAVGGVLHCFTEDLDMAREAIRLGFYISLSGIV
HHHCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
TFRNATAVRELARRIPLDRLLIETDSPYLAPVPHRGKPNEPQWVVEVAECIAAERGISVD
EECHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
EVAMQTTANFYRLFREALPEAPEDVREALTHLTGQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MFVDSHCHLDRLDLAAHDGQLATALDAARQRGVRQFLAIAVTLDDVPGLVDIARAHDDVT
CCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCCEE
FSAGVHPLHTVPDEPDTQAIVACAERHGAVAIGETGLDYHYDGVAHDVQYARFANHLRAA
EECCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
RELALPVIVHTRDAKEDTLALIREHTDPAVGGVLHCFTEDLDMAREAIRLGFYISLSGIV
HHHCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
TFRNATAVRELARRIPLDRLLIETDSPYLAPVPHRGKPNEPQWVVEVAECIAAERGISVD
EECHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
EVAMQTTANFYRLFREALPEAPEDVREALTHLTGQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]