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The map label for this gene is ycaD [C]

Identifier: 92112338

GI number: 92112338

Start: 222948

End: 224279

Strand: Direct

Name: ycaD [C]

Synonym: Csal_0203

Alternate gene names: 92112338

Gene position: 222948-224279 (Clockwise)

Preceding gene: 92112336

Following gene: 92112339

Centisome position: 6.03

GC content: 65.54

Gene sequence:

>1332_bases
ATGAAGGCCGCCACCACTCGTCCCACCACCTTGTCCGCTGCCTGGAGCCTATGGACGCTGCTGCTCGGCGTGGGGCTTTT
GATGATGGGCAATGGCCTGCAGGGCTCGCTGCTCGGGGTGCGGGCCTCGGCGGCGGATTTCGGCAACACGGTCACGGGGC
TGGTGATGTCGTCCTACTTCGTGGGCTTTCTGGTCGGCTCGGTGCTGACGCCCCGCAAGCTGCGTGAGGTCGGACACGTG
CGGGTCTTCGCCGCGCTGGCCTCGATCACCTCGGTGGCGATCCTGATTCATGCCCTGTTCGTCGAGCCTCTGGTGTGGGC
GGCCATGCGCTTTGTCACCGGCTTTACGTACGCCGGACTCTACGTCGTCGCCGAAAGTTGGCTCAACGGTTATGCCTCCA
ACCGGCTGCGCGGGCGCCTGCTGGCGATCTACATGGTGATCAGCTATCTCGGCATGGGCGGCGGGCAACTGCTGCTGGGC
AGTGCCGACCCCTCGGGCATGGCGTTGTTCCTGCTGGTGTCGATCCTGGTCTCGCTCGCCCTGGTGCCGATCTTGATCAG
CTACACGCCGCAGCCCGAACTCAGTCAGCCCGAGGCGATGAGCCTGCGCGCGTTGTACCGGCTCTCGCCGCTGGGCACGG
TGGGCTGCTTCATGACCGGCATCACCAATGGCGCCGTGTTCGGCATGGGGGCGGTGTTCGCCACCAACAGCGGCTTGAGC
GTCGCCCAGGTCTCGGTCTTCATGAGCGCCTTCATCTTCGGCGGCGCGATCCTGCAGTGGCCGCTGGGCAAGTTGTCCGA
CAAGGCCGACCGCCAGTGGGTGATCGTCGGCGTCGCCCTGGTCGCGGTGATGCTGGCGCTGGTTGGTGCGCTCGTCAGCG
GCTGGTCGCCGATGGCCTTGACGCTGCTCGGGGCGCTGCTGGGCGCGACGACACTCACGCTCTACTCGATCTTTCTGGCC
TGCGCCAATGACTTCCTCACCGATCAGCAGACCGTGGCGGCCAGTGCCAGTCTCGTTCTGGCGTTGGGCATCGGCGCGAT
TCTGGGACCGGCCAGCGCCGGGGTGCTGATGGAATGGCTGGGACCGGATGGTTTCCTGTGGGACCTGGCCGTCATGCACA
TCGTCATGGTGTTGTTCGGGCTTTACTGCATTCGTCACTATCCCACCAGCGAATCGCCCGAGCAGGGCCACTACGTGATG
GTGGCCTCGGACACCACGCCGCTGGGCACGGCCTGGACGGAAGAAGCCGCGCAGGAAGAAGGGCAACTGGAACTGGCGCT
GGAGCTGGAAGGTGAGGGTGACGATGAGAGTGCCGAGGGCATGACGAGATAG

Upstream 100 bases:

>100_bases
TCATCCGCGGCATGCCGTGGCGTGTTCCGCCGTATCCCTCGACGGGACCGAGTATTATCCTGGCGCGCGTATGATCGTTT
TACCGACCGGGAGCCGCGCG

Downstream 100 bases:

>100_bases
CGTTGCCGCACTGGTTGACCCAATGTCCCTCGCCAGCAACAAATCCTCACAGAACGCAGGGGCCACCAGGGCACACTTCA
CTTTCATCCATGTTAAATTA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKAATTRPTTLSAAWSLWTLLLGVGLLMMGNGLQGSLLGVRASAADFGNTVTGLVMSSYFVGFLVGSVLTPRKLREVGHV
RVFAALASITSVAILIHALFVEPLVWAAMRFVTGFTYAGLYVVAESWLNGYASNRLRGRLLAIYMVISYLGMGGGQLLLG
SADPSGMALFLLVSILVSLALVPILISYTPQPELSQPEAMSLRALYRLSPLGTVGCFMTGITNGAVFGMGAVFATNSGLS
VAQVSVFMSAFIFGGAILQWPLGKLSDKADRQWVIVGVALVAVMLALVGALVSGWSPMALTLLGALLGATTLTLYSIFLA
CANDFLTDQQTVAASASLVLALGIGAILGPASAGVLMEWLGPDGFLWDLAVMHIVMVLFGLYCIRHYPTSESPEQGHYVM
VASDTTPLGTAWTEEAAQEEGQLELALELEGEGDDESAEGMTR

Sequences:

>Translated_443_residues
MKAATTRPTTLSAAWSLWTLLLGVGLLMMGNGLQGSLLGVRASAADFGNTVTGLVMSSYFVGFLVGSVLTPRKLREVGHV
RVFAALASITSVAILIHALFVEPLVWAAMRFVTGFTYAGLYVVAESWLNGYASNRLRGRLLAIYMVISYLGMGGGQLLLG
SADPSGMALFLLVSILVSLALVPILISYTPQPELSQPEAMSLRALYRLSPLGTVGCFMTGITNGAVFGMGAVFATNSGLS
VAQVSVFMSAFIFGGAILQWPLGKLSDKADRQWVIVGVALVAVMLALVGALVSGWSPMALTLLGALLGATTLTLYSIFLA
CANDFLTDQQTVAASASLVLALGIGAILGPASAGVLMEWLGPDGFLWDLAVMHIVMVLFGLYCIRHYPTSESPEQGHYVM
VASDTTPLGTAWTEEAAQEEGQLELALELEGEGDDESAEGMTR
>Mature_443_residues
MKAATTRPTTLSAAWSLWTLLLGVGLLMMGNGLQGSLLGVRASAADFGNTVTGLVMSSYFVGFLVGSVLTPRKLREVGHV
RVFAALASITSVAILIHALFVEPLVWAAMRFVTGFTYAGLYVVAESWLNGYASNRLRGRLLAIYMVISYLGMGGGQLLLG
SADPSGMALFLLVSILVSLALVPILISYTPQPELSQPEAMSLRALYRLSPLGTVGCFMTGITNGAVFGMGAVFATNSGLS
VAQVSVFMSAFIFGGAILQWPLGKLSDKADRQWVIVGVALVAVMLALVGALVSGWSPMALTLLGALLGATTLTLYSIFLA
CANDFLTDQQTVAASASLVLALGIGAILGPASAGVLMEWLGPDGFLWDLAVMHIVMVLFGLYCIRHYPTSESPEQGHYVM
VASDTTPLGTAWTEEAAQEEGQLELALELEGEGDDESAEGMTR

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=308, Percent_Identity=31.4935064935065, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 46619; Mature: 46619

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAATTRPTTLSAAWSLWTLLLGVGLLMMGNGLQGSLLGVRASAADFGNTVTGLVMSSYF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHCCHHHHHHHHHHH
VGFLVGSVLTPRKLREVGHVRVFAALASITSVAILIHALFVEPLVWAAMRFVTGFTYAGL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVVAESWLNGYASNRLRGRLLAIYMVISYLGMGGGQLLLGSADPSGMALFLLVSILVSLA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
LVPILISYTPQPELSQPEAMSLRALYRLSPLGTVGCFMTGITNGAVFGMGAVFATNSGLS
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCCHHEECCCCCH
VAQVSVFMSAFIFGGAILQWPLGKLSDKADRQWVIVGVALVAVMLALVGALVSGWSPMAL
HHHHHHHHHHHHHCCHHHHCCCHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHH
TLLGALLGATTLTLYSIFLACANDFLTDQQTVAASASLVLALGIGAILGPASAGVLMEWL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GPDGFLWDLAVMHIVMVLFGLYCIRHYPTSESPEQGHYVMVASDTTPLGTAWTEEAAQEE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCC
GQLELALELEGEGDDESAEGMTR
CCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MKAATTRPTTLSAAWSLWTLLLGVGLLMMGNGLQGSLLGVRASAADFGNTVTGLVMSSYF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHCCHHHHHHHHHHH
VGFLVGSVLTPRKLREVGHVRVFAALASITSVAILIHALFVEPLVWAAMRFVTGFTYAGL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVVAESWLNGYASNRLRGRLLAIYMVISYLGMGGGQLLLGSADPSGMALFLLVSILVSLA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHH
LVPILISYTPQPELSQPEAMSLRALYRLSPLGTVGCFMTGITNGAVFGMGAVFATNSGLS
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHCCHHEECCCCCH
VAQVSVFMSAFIFGGAILQWPLGKLSDKADRQWVIVGVALVAVMLALVGALVSGWSPMAL
HHHHHHHHHHHHHCCHHHHCCCHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHH
TLLGALLGATTLTLYSIFLACANDFLTDQQTVAASASLVLALGIGAILGPASAGVLMEWL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GPDGFLWDLAVMHIVMVLFGLYCIRHYPTSESPEQGHYVMVASDTTPLGTAWTEEAAQEE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCC
GQLELALELEGEGDDESAEGMTR
CCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA