Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is aroE [H]
Identifier: 91790327
GI number: 91790327
Start: 4749826
End: 4750659
Strand: Reverse
Name: aroE [H]
Synonym: Bpro_4495
Alternate gene names: 91790327
Gene position: 4750659-4749826 (Counterclockwise)
Preceding gene: 91790328
Following gene: 91790325
Centisome position: 91.35
GC content: 64.03
Gene sequence:
>834_bases ATGATCAACGGCAACACCGAACTCATTGCCCACATCGGTTACCCCACGCATTCGTTCAAGGCGCCGATGATCTACAACCC CTACTTTGACCACATCGGCGTCAATGCCCGGGTGATGCCCATGGGCTGCCAGAGCGCTGACTACCCGGCCTTTCTGCGCG CGGTGTTCACGCTGACCAACATTCGGGGCGCCCTGATCACCATGCCGCACAAGGTCACCACGGTGGACCTGCTCGACCGC GCCACGCCCACCGTGTCGGTGGCGGGCTCGTGCAACGCCGTGCGGCGCGGCGCCGATGGCAAGCTCGAAGGCGACATGTT CGATGGCGAAGGCTTTGTGCGCGGTGTGCAGCGCAAGGGCCTGACGCTGGACGGTGCCCGGGTGCTGGTGGTCGGCAGCG GTGGCGTGGGATCGGCGATTGCCGCATCGCTGGCGGCGGCCGGTATTGGCGCCATCAGCCTGCATGACGTGAACACCGCG TCCTGCGAAGGCCTGGGCGCGCGGCTGAGAAAGCACTACCCCAGGTTGCAGGTCAGCACCATGTCCAATGACCCGGCCGG CCACGACCTGGTGGTCAATGCCACGCCCATGGGAATGAACGAGGGCGACCCGATGCCCATGGACATTGCGCGCATCGCGC CGACCACCTTTGTCGGCGAAGTCGTGATGAAGACAGAGATGACCGCTTTCCTCAATGCTGCGGAGGCACGCGGCTGCCCC ATCCAGGTGGGTTCGGACATGCTGTTCGAGCAGATCCCGGCCTATCTTGAATTTTTTGGCTTCCCGACCACCACGCCCGA GGTGCTGCGTTCCGTGGCGAAACTCAGTTACTGA
Upstream 100 bases:
>100_bases GCAACCCGAATCATCCAGCGGTCACCATCCAACCCAATCCGATAACGACGCCCCAGCGACACCCCGGCGCACTCACCCCA CTCACCATCAGGACACGCAC
Downstream 100 bases:
>100_bases CCATCATGCGGCGTCCGGGCGCGCAGCGTCATCCGCGCGCAGCAGGCCATGGCGAATGGCAGGCGCTGACGGATTCGCCA TCATGACGGCCCAGGGCAAC
Product: shikimate dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MINGNTELIAHIGYPTHSFKAPMIYNPYFDHIGVNARVMPMGCQSADYPAFLRAVFTLTNIRGALITMPHKVTTVDLLDR ATPTVSVAGSCNAVRRGADGKLEGDMFDGEGFVRGVQRKGLTLDGARVLVVGSGGVGSAIAASLAAAGIGAISLHDVNTA SCEGLGARLRKHYPRLQVSTMSNDPAGHDLVVNATPMGMNEGDPMPMDIARIAPTTFVGEVVMKTEMTAFLNAAEARGCP IQVGSDMLFEQIPAYLEFFGFPTTTPEVLRSVAKLSY
Sequences:
>Translated_277_residues MINGNTELIAHIGYPTHSFKAPMIYNPYFDHIGVNARVMPMGCQSADYPAFLRAVFTLTNIRGALITMPHKVTTVDLLDR ATPTVSVAGSCNAVRRGADGKLEGDMFDGEGFVRGVQRKGLTLDGARVLVVGSGGVGSAIAASLAAAGIGAISLHDVNTA SCEGLGARLRKHYPRLQVSTMSNDPAGHDLVVNATPMGMNEGDPMPMDIARIAPTTFVGEVVMKTEMTAFLNAAEARGCP IQVGSDMLFEQIPAYLEFFGFPTTTPEVLRSVAKLSY >Mature_277_residues MINGNTELIAHIGYPTHSFKAPMIYNPYFDHIGVNARVMPMGCQSADYPAFLRAVFTLTNIRGALITMPHKVTTVDLLDR ATPTVSVAGSCNAVRRGADGKLEGDMFDGEGFVRGVQRKGLTLDGARVLVVGSGGVGSAIAASLAAAGIGAISLHDVNTA SCEGLGARLRKHYPRLQVSTMSNDPAGHDLVVNATPMGMNEGDPMPMDIARIAPTTFVGEVVMKTEMTAFLNAAEARGCP IQVGSDMLFEQIPAYLEFFGFPTTTPEVLRSVAKLSY
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1787983, Length=262, Percent_Identity=25.9541984732824, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789675, Length=275, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 29393; Mature: 29393
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINGNTELIAHIGYPTHSFKAPMIYNPYFDHIGVNARVMPMGCQSADYPAFLRAVFTLTN CCCCCEEEEEEECCCCCCCCCCEEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH IRGALITMPHKVTTVDLLDRATPTVSVAGSCNAVRRGADGKLEGDMFDGEGFVRGVQRKG CCEEEEECCCCEEEHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCEECCCHHHHHHHHCC LTLDGARVLVVGSGGVGSAIAASLAAAGIGAISLHDVNTASCEGLGARLRKHYPRLQVST EEECCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE MSNDPAGHDLVVNATPMGMNEGDPMPMDIARIAPTTFVGEVVMKTEMTAFLNAAEARGCP CCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC IQVGSDMLFEQIPAYLEFFGFPTTTPEVLRSVAKLSY EEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MINGNTELIAHIGYPTHSFKAPMIYNPYFDHIGVNARVMPMGCQSADYPAFLRAVFTLTN CCCCCEEEEEEECCCCCCCCCCEEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH IRGALITMPHKVTTVDLLDRATPTVSVAGSCNAVRRGADGKLEGDMFDGEGFVRGVQRKG CCEEEEECCCCEEEHHHHHCCCCCEEECCCCHHHHCCCCCCCCCCEECCCHHHHHHHHCC LTLDGARVLVVGSGGVGSAIAASLAAAGIGAISLHDVNTASCEGLGARLRKHYPRLQVST EEECCCEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEE MSNDPAGHDLVVNATPMGMNEGDPMPMDIARIAPTTFVGEVVMKTEMTAFLNAAEARGCP CCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC IQVGSDMLFEQIPAYLEFFGFPTTTPEVLRSVAKLSY EEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA