Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yhbN [C]
Identifier: 91790319
GI number: 91790319
Start: 4741831
End: 4742448
Strand: Reverse
Name: yhbN [C]
Synonym: Bpro_4487
Alternate gene names: 91790319
Gene position: 4742448-4741831 (Counterclockwise)
Preceding gene: 91790320
Following gene: 91790318
Centisome position: 91.2
GC content: 65.86
Gene sequence:
>618_bases ATGAAACACCCCTTTTTTTCCTTGATCGTGCTGGCCGCACTGGCGGTCGGGGCCGTGTTTCCCGTCGCTGCCGAGCGGGC TGACCGCGACAAGCCGATGAACGCGGAGGCCGATGCCCTGCGTTATGACGACCTGAAACAGACCAGCGTGTTCACCGGCA ATGTGGTGATCACCAAGGGCACCACCATTGTCCGGGGCGAGCGGGTGGATGTCAGCCAGGATCCCCAGGGCTACCAGCAG GCCCTGGCCGTGGCGGCACCGGGCAAGCTGGCCTTTTACCGGAAAAAGCGCGACGGGGTGGACGAGTACATCGAAGGCGA GGGCGAGCGGATCGAATACGACAGCCGTGCCGATACCGTCAAATTCATCAAGCAGGCCGTGGTGCGCCGCTACAACGGCG CGACCCTGGTCGACGAAACGACCGGCTCCCTGATTGTTTACGACAACAACACCGATGTGTTCACGGTCGACGGAGGCGCA CAAAACCGCACCGCCGTCAACCCCACCGGGCGGATTCGCGCCATGCTGTCGCCGCGCGGTGCCGCCTCGGCACCGCAGCC GGCCGCCGCGCCCGCGCCCGCGCCCAGTCTGCGTCCCAGCACCACGCTGGGGCAATGA
Upstream 100 bases:
>100_bases GTGGCGGGTTTTTTTATGGGCCCATTTGCCGGCGCCGGCAATCCCGGGGCTGGCATGGCTACAATCACTCCAAACCCTTA GCAGCAAGATTCGTGCCTTT
Downstream 100 bases:
>100_bases CGAAACTCCCAACATGGACAGAATGGACAATCCAACCGCGAATGTGGTGACTGACGCGCCGGCAACCCACACCCAGCCGC CCAGCCGTCTGGTGGCCCAG
Product: OstA-like protein
Products: NA
Alternate protein names: OstA-Like Protein; OstA Family Protein; OstA-Like Family Protein; Signal Peptide Protein; Lipopolysaccharide Transport Periplasmic Protein Lpta; Protein YhbN; Exported Protein
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MKHPFFSLIVLAALAVGAVFPVAAERADRDKPMNAEADALRYDDLKQTSVFTGNVVITKGTTIVRGERVDVSQDPQGYQQ ALAVAAPGKLAFYRKKRDGVDEYIEGEGERIEYDSRADTVKFIKQAVVRRYNGATLVDETTGSLIVYDNNTDVFTVDGGA QNRTAVNPTGRIRAMLSPRGAASAPQPAAAPAPAPSLRPSTTLGQ
Sequences:
>Translated_205_residues MKHPFFSLIVLAALAVGAVFPVAAERADRDKPMNAEADALRYDDLKQTSVFTGNVVITKGTTIVRGERVDVSQDPQGYQQ ALAVAAPGKLAFYRKKRDGVDEYIEGEGERIEYDSRADTVKFIKQAVVRRYNGATLVDETTGSLIVYDNNTDVFTVDGGA QNRTAVNPTGRIRAMLSPRGAASAPQPAAAPAPAPSLRPSTTLGQ >Mature_205_residues MKHPFFSLIVLAALAVGAVFPVAAERADRDKPMNAEADALRYDDLKQTSVFTGNVVITKGTTIVRGERVDVSQDPQGYQQ ALAVAAPGKLAFYRKKRDGVDEYIEGEGERIEYDSRADTVKFIKQAVVRRYNGATLVDETTGSLIVYDNNTDVFTVDGGA QNRTAVNPTGRIRAMLSPRGAASAPQPAAAPAPAPSLRPSTTLGQ
Specific function: Unknown
COG id: COG1934
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21997; Mature: 21997
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHPFFSLIVLAALAVGAVFPVAAERADRDKPMNAEADALRYDDLKQTSVFTGNVVITKG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEECCEEEECC TTIVRGERVDVSQDPQGYQQALAVAAPGKLAFYRKKRDGVDEYIEGEGERIEYDSRADTV CEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCEEEECCCHHHH KFIKQAVVRRYNGATLVDETTGSLIVYDNNTDVFTVDGGAQNRTAVNPTGRIRAMLSPRG HHHHHHHHHHCCCCEEEECCCCCEEEEECCCCEEEECCCCCCCEEECCCCEEEEEECCCC AASAPQPAAAPAPAPSLRPSTTLGQ CCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKHPFFSLIVLAALAVGAVFPVAAERADRDKPMNAEADALRYDDLKQTSVFTGNVVITKG CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCEEEECCEEEECC TTIVRGERVDVSQDPQGYQQALAVAAPGKLAFYRKKRDGVDEYIEGEGERIEYDSRADTV CEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHCCCCCEEEECCCHHHH KFIKQAVVRRYNGATLVDETTGSLIVYDNNTDVFTVDGGAQNRTAVNPTGRIRAMLSPRG HHHHHHHHHHCCCCEEEECCCCCEEEEECCCCEEEECCCCCCCEEECCCCEEEEEECCCC AASAPQPAAAPAPAPSLRPSTTLGQ CCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA