Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is catA [H]
Identifier: 91789313
GI number: 91789313
Start: 3663110
End: 3663760
Strand: Direct
Name: catA [H]
Synonym: Bpro_3458
Alternate gene names: 91789313
Gene position: 3663110-3663760 (Clockwise)
Preceding gene: 91789312
Following gene: 91789320
Centisome position: 70.44
GC content: 66.82
Gene sequence:
>651_bases ATGCGTCCAAAGCCTCCTGACCGGCCAGCTCCATCGGGCTGGAACCGCCGTGCCGTTGCGCTGGCGCTGGTTGCCTCGCC TGTTGTGTGGACAGGCGCCCGCGCCCAGCCGGCTCGTCCGCGGCGCGCAACACCCAGCCAGACCGAAGGCCCGTTCTACC CGCTCACCCTGCCGCAGGACGCAGACTTTGACCTGCTGCGCAACGGCGCGCTGAATTACACCCAGGGGCAGCCAAGCTGG CTCGAAGGCTCGGTTACCGACCTGAACGGCAAGCCCTTGCGGGGCGCCCAGGTTGAAATCTGGCAATGCGACCACGCCGG CCACTACGATCACCCCGGCGACGGCGGCCGTATCGACAGGGCGTTTCAGGGTTTCGGCCGCGTGACGGTGAATGCACAGG GCGAGTACCGCTTTCGCACCATTCGTCCGGTGGCTTACGGGAGCCGCACGCCGCACATCCATGTGAAGGTCAAGCTCGGT GGCCGCGAGTTGCTGACGACGCAACTCTATGTGGCCGGTGAGCCGCTGAACCAGCGTGATTTTTTATGGCGCAACCTGCG GGACGATGACGCCCGCGCAGCACTCACCGTGCCGTTCACCCCTGTGCCGGACGGGCTGCGGGCGCAGTTCCCGCTGGTGG TGGAGGTCTGA
Upstream 100 bases:
>100_bases ACAATGGATGCAATTTGAAAGCCCGCCGCCCTTCTGAGCCTTTTTGTGAATCGCCTGCTCAGACGGGGTTCGCGATCTCC GGAAAAAATGGAGCATCGTC
Downstream 100 bases:
>100_bases AGCTGGCGGTGGAAGCTGGCCACCCGGAACCCGGGCACCCTAATCTCGGCGTGCTAATCGCGCACAACCAGCACCGGCAA ATGGGCATGTGACAGCACCT
Product: intradiol ring-cleavage dioxygenase
Products: NA
Alternate protein names: 1,2-CTD [H]
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MRPKPPDRPAPSGWNRRAVALALVASPVVWTGARAQPARPRRATPSQTEGPFYPLTLPQDADFDLLRNGALNYTQGQPSW LEGSVTDLNGKPLRGAQVEIWQCDHAGHYDHPGDGGRIDRAFQGFGRVTVNAQGEYRFRTIRPVAYGSRTPHIHVKVKLG GRELLTTQLYVAGEPLNQRDFLWRNLRDDDARAALTVPFTPVPDGLRAQFPLVVEV
Sequences:
>Translated_216_residues MRPKPPDRPAPSGWNRRAVALALVASPVVWTGARAQPARPRRATPSQTEGPFYPLTLPQDADFDLLRNGALNYTQGQPSW LEGSVTDLNGKPLRGAQVEIWQCDHAGHYDHPGDGGRIDRAFQGFGRVTVNAQGEYRFRTIRPVAYGSRTPHIHVKVKLG GRELLTTQLYVAGEPLNQRDFLWRNLRDDDARAALTVPFTPVPDGLRAQFPLVVEV >Mature_216_residues MRPKPPDRPAPSGWNRRAVALALVASPVVWTGARAQPARPRRATPSQTEGPFYPLTLPQDADFDLLRNGALNYTQGQPSW LEGSVTDLNGKPLRGAQVEIWQCDHAGHYDHPGDGGRIDRAFQGFGRVTVNAQGEYRFRTIRPVAYGSRTPHIHVKVKLG GRELLTTQLYVAGEPLNQRDFLWRNLRDDDARAALTVPFTPVPDGLRAQFPLVVEV
Specific function: Unknown
COG id: COG3485
COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007535 - InterPro: IPR012801 - InterPro: IPR000627 - InterPro: IPR015889 [H]
Pfam domain/function: PF00775 Dioxygenase_C; PF04444 Dioxygenase_N [H]
EC number: =1.13.11.1 [H]
Molecular weight: Translated: 23990; Mature: 23990
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: PS00083 INTRADIOL_DIOXYGENAS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPKPPDRPAPSGWNRRAVALALVASPVVWTGARAQPARPRRATPSQTEGPFYPLTLPQD CCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCC ADFDLLRNGALNYTQGQPSWLEGSVTDLNGKPLRGAQVEIWQCDHAGHYDHPGDGGRIDR CCHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCH AFQGFGRVTVNAQGEYRFRTIRPVAYGSRTPHIHVKVKLGGRELLTTQLYVAGEPLNQRD HHCCCCEEEEECCCCEEEEEECEEEECCCCCEEEEEEEECCCEEEEEEEEEECCCCCCHH FLWRNLRDDDARAALTVPFTPVPDGLRAQFPLVVEV HHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEC >Mature Secondary Structure MRPKPPDRPAPSGWNRRAVALALVASPVVWTGARAQPARPRRATPSQTEGPFYPLTLPQD CCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCC ADFDLLRNGALNYTQGQPSWLEGSVTDLNGKPLRGAQVEIWQCDHAGHYDHPGDGGRIDR CCHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCH AFQGFGRVTVNAQGEYRFRTIRPVAYGSRTPHIHVKVKLGGRELLTTQLYVAGEPLNQRD HHCCCCEEEEECCCCEEEEEECEEEECCCCCEEEEEEEECCCEEEEEEEEEECCCCCCHH FLWRNLRDDDARAALTVPFTPVPDGLRAQFPLVVEV HHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3170486; 10801478 [H]