Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is yxjH [H]
Identifier: 91789244
GI number: 91789244
Start: 3581730
End: 3582863
Strand: Direct
Name: yxjH [H]
Synonym: Bpro_3388
Alternate gene names: 91789244
Gene position: 3581730-3582863 (Clockwise)
Preceding gene: 91789233
Following gene: 91789248
Centisome position: 68.88
GC content: 63.14
Gene sequence:
>1134_bases ATGAGCAACACGAGCAACACCGCCCCTCACCTGCCCGCGCGCTATGACCACGTGGGCAGTTTTTTGCGCCCGAAATATTT GCTGGAAGCCCGCGAACAAAAAGCCCAGGGCCAGATCACGCCCGAGCAGTTGCGCCAGGTGGAAGACCGGGCCATCACCG AGATTGTGAGATTCCAGGAAGACGTGGGCCTGAAAAGCATCACCGACGGCGAGTTTCGCCGCACCTACTTTCACATTGAC TTTCTGGAGCAGATCGGCGGCGTGAAAACCGACATCCCGGTGACCGTGATCCGGCCCGACGGCTCGCAGGAGCTGGCCCC GCCGGTGATGCGCGTGATTGACAAGGTGCGCCACGTCAAGGACATCCAGCTGGCCGACTTCCAGTACCTCAAGAGCCAGG TATCGGCAGGCAATACGCCCAAGGTGACCATTCCGTCACCGACCATGCTGCACTTTCGCGGCGGCCGGGCCGGCATCAGC AAGGAGCACTACCCCGAGCTGGACCCGCAGTTCTACCAGGACGTGGCCAACGCCTACGGTGACGAGCTGCGCTCGCTGGC CGCCGCCGGCTGCACCTATGTGCAGATGGACGACACCAACCTGGCCTACCTGTGCGACGAAAAAATGCGCGAAGCCGCAC GCCAGCGCGGCGACGACCCCAATGAGCTGCCGCACCGCTACGCCAAATTCATCAACCTCGTTGTCGCGCAAAAGCCGCCC GGCATGCTGCTGGCCATGCACCTGTGCCGTGGCAACTTCAAGAGCACGCACGCGGCATCGGGCAATTACGAGCCGGTGGC CGAGGCGCTGCTGAAAGAAATGAACCTCGACGCCTACTTCATGGAGTACGACGACGCGCGCAGCGGCGACTTCAAACCGC TGCGTTACCTGCCCAAGGGAAAGACCGTGGTGCTGGGACTCGTCACCACCAAGTTTGGCTCGCTGGAAGACAAGGACGAC CTGAAACGCCGCATTGAAGCCGCGGCCCGCTACGCGCCGCTGGAGCAGCTGGCGCTGTCACCGCAGTGCGGCTTCAGCAG CACCGTGCACGGCAATGACATTGCCGTTGAGGCGCAGCGCGCCAAGCTGCGGCTGGTGGTGGAAACGGCGCAGGAGGTTT GGGGAACGGCCTGA
Upstream 100 bases:
>100_bases TAGCCATTTCTAGGTGTTTTCACCAGTTTTTGTATTCATTGAAAGAGTTGATCAATGCCTTAACATGCAAGTTAATCACC GCCTCAACCAAGGACTCCGT
Downstream 100 bases:
>100_bases AGCATCACCACCGCAGGCCATGACACGAGCCGGCGCGGTCGGTGGCCAGCGCGTGGCGCCGCGGCTTCACGACACAAAAG CCGACGGCACGGGGGCTTCG
Product: methionine synthase, vitamin-B12 independent
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MSNTSNTAPHLPARYDHVGSFLRPKYLLEAREQKAQGQITPEQLRQVEDRAITEIVRFQEDVGLKSITDGEFRRTYFHID FLEQIGGVKTDIPVTVIRPDGSQELAPPVMRVIDKVRHVKDIQLADFQYLKSQVSAGNTPKVTIPSPTMLHFRGGRAGIS KEHYPELDPQFYQDVANAYGDELRSLAAAGCTYVQMDDTNLAYLCDEKMREAARQRGDDPNELPHRYAKFINLVVAQKPP GMLLAMHLCRGNFKSTHAASGNYEPVAEALLKEMNLDAYFMEYDDARSGDFKPLRYLPKGKTVVLGLVTTKFGSLEDKDD LKRRIEAAARYAPLEQLALSPQCGFSSTVHGNDIAVEAQRAKLRLVVETAQEVWGTA
Sequences:
>Translated_377_residues MSNTSNTAPHLPARYDHVGSFLRPKYLLEAREQKAQGQITPEQLRQVEDRAITEIVRFQEDVGLKSITDGEFRRTYFHID FLEQIGGVKTDIPVTVIRPDGSQELAPPVMRVIDKVRHVKDIQLADFQYLKSQVSAGNTPKVTIPSPTMLHFRGGRAGIS KEHYPELDPQFYQDVANAYGDELRSLAAAGCTYVQMDDTNLAYLCDEKMREAARQRGDDPNELPHRYAKFINLVVAQKPP GMLLAMHLCRGNFKSTHAASGNYEPVAEALLKEMNLDAYFMEYDDARSGDFKPLRYLPKGKTVVLGLVTTKFGSLEDKDD LKRRIEAAARYAPLEQLALSPQCGFSSTVHGNDIAVEAQRAKLRLVVETAQEVWGTA >Mature_376_residues SNTSNTAPHLPARYDHVGSFLRPKYLLEAREQKAQGQITPEQLRQVEDRAITEIVRFQEDVGLKSITDGEFRRTYFHIDF LEQIGGVKTDIPVTVIRPDGSQELAPPVMRVIDKVRHVKDIQLADFQYLKSQVSAGNTPKVTIPSPTMLHFRGGRAGISK EHYPELDPQFYQDVANAYGDELRSLAAAGCTYVQMDDTNLAYLCDEKMREAARQRGDDPNELPHRYAKFINLVVAQKPPG MLLAMHLCRGNFKSTHAASGNYEPVAEALLKEMNLDAYFMEYDDARSGDFKPLRYLPKGKTVVLGLVTTKFGSLEDKDDL KRRIEAAARYAPLEQLALSPQCGFSSTVHGNDIAVEAQRAKLRLVVETAQEVWGTA
Specific function: Unknown
COG id: COG0620
COG function: function code E; Methionine synthase II (cobalamin-independent)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis yxjG [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002629 [H]
Pfam domain/function: PF01717 Meth_synt_2 [H]
EC number: NA
Molecular weight: Translated: 42270; Mature: 42139
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTSNTAPHLPARYDHVGSFLRPKYLLEAREQKAQGQITPEQLRQVEDRAITEIVRFQE CCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH DVGLKSITDGEFRRTYFHIDFLEQIGGVKTDIPVTVIRPDGSQELAPPVMRVIDKVRHVK HCCCCCCCCCCHHHHEEEEEHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH DIQLADFQYLKSQVSAGNTPKVTIPSPTMLHFRGGRAGISKEHYPELDPQFYQDVANAYG CCHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH DELRSLAAAGCTYVQMDDTNLAYLCDEKMREAARQRGDDPNELPHRYAKFINLVVAQKPP HHHHHHHHCCCEEEEECCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC GMLLAMHLCRGNFKSTHAASGNYEPVAEALLKEMNLDAYFMEYDDARSGDFKPLRYLPKG CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCC KTVVLGLVTTKFGSLEDKDDLKRRIEAAARYAPLEQLALSPQCGFSSTVHGNDIAVEAQR CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEEEEHH AKLRLVVETAQEVWGTA HHHHHHHHHHHHHCCCC >Mature Secondary Structure SNTSNTAPHLPARYDHVGSFLRPKYLLEAREQKAQGQITPEQLRQVEDRAITEIVRFQE CCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH DVGLKSITDGEFRRTYFHIDFLEQIGGVKTDIPVTVIRPDGSQELAPPVMRVIDKVRHVK HCCCCCCCCCCHHHHEEEEEHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHH DIQLADFQYLKSQVSAGNTPKVTIPSPTMLHFRGGRAGISKEHYPELDPQFYQDVANAYG CCHHHHHHHHHHHHCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH DELRSLAAAGCTYVQMDDTNLAYLCDEKMREAARQRGDDPNELPHRYAKFINLVVAQKPP HHHHHHHHCCCEEEEECCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC GMLLAMHLCRGNFKSTHAASGNYEPVAEALLKEMNLDAYFMEYDDARSGDFKPLRYLPKG CHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEECCCC KTVVLGLVTTKFGSLEDKDDLKRRIEAAARYAPLEQLALSPQCGFSSTVHGNDIAVEAQR CEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEEEEHH AKLRLVVETAQEVWGTA HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969509; 9384377 [H]