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The map label for this gene is nodB [H]

Identifier: 91789160

GI number: 91789160

Start: 3499116

End: 3499934

Strand: Direct

Name: nodB [H]

Synonym: Bpro_3302

Alternate gene names: 91789160

Gene position: 3499116-3499934 (Clockwise)

Preceding gene: 91789159

Following gene: 91789161

Centisome position: 67.29

GC content: 69.72

Gene sequence:

>819_bases
TTGCGAGGCCATCCCGTGCCTGATCCGCGCTGGCACTCCACGCCGCTGATCCGCGCATCCCTTGCGCTGCATGGGCTGGC
ACTGGTCGCCGTCGTCGCCGTGCCCGGGTTGTGGCGCTGGGCGCTGGCCGCCGTGGTGGCCAATCACCTGCTGATCGCCG
CCGCTGGCCTGTGGCCGCGCAGCCACTGGCTGGGGCCGAACTGGACACGGCTGCCCGCCGCCGCCACGGCCAGACATGAA
ATCGCCCTGACCATCGACGATGGCCCTGACCCCGTCGTCACCCCGCGGGTGCTGGACCTGCTCGATCGCCATGCGGTCAA
GGCCACGTTTTTCTGCATCGGCGAACTGGCCGCGCGCTATCCGGAGCTGTGCCGCGAAATCGTCCGGCGCGGACATGCGG
TCGAAAATCACAGCCAGCATCACCGCCATTATTTTTCCGTGATGGGCCCGCGCGGCCTGGCGCGGGAACTGCAAGCCGCG
CAAGAAACGCTCACCCGAATCTGCGGCCAGCGACCGCTGTTCTTTCGTGCCCCGGCCGGCTTGCGCAACCCCTTCCTGGA
GCCGGTGCTGGCCCGCTTCGGGCTCAGGCTTGCTACTTGGTCCGCACGGGGGTTCGACACCCGCATCGACGACGTTGATC
GCGTCAAAAGCAGCCTGCTGCGCGGCCTGCGGGCGGGCGCCATCCTGCTGCTGCACGACGGCCATGCCGCGCGCACCCCG
CAGGGCGTGCCCGTGATTCTCGCGGTGTTGCCGGGCGTGCTCGACGCTGCGGCCGCCGCCGGCCTGCGTGTTGTCACCTT
GCGCCAGGCCCTGTCATGA

Upstream 100 bases:

>100_bases
GGTTTTGGGCTGCTGGCTTTTTCCAAGGTATCCATACTGCACGCCATGGGTGTGACCGTGGCACCGGGCGTCATCCTGGC
GCTCGTCTATGCCGCCATTT

Downstream 100 bases:

>100_bases
CTGCCTCGTCCGGCTGGTTTTCATGCAAGCAGCAGGTGGTGAAATGCACACCCTGATCACGCACCCGCCCGCAACAGCCT
GGTACCGTCAGGCTGCCGCG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MRGHPVPDPRWHSTPLIRASLALHGLALVAVVAVPGLWRWALAAVVANHLLIAAAGLWPRSHWLGPNWTRLPAAATARHE
IALTIDDGPDPVVTPRVLDLLDRHAVKATFFCIGELAARYPELCREIVRRGHAVENHSQHHRHYFSVMGPRGLARELQAA
QETLTRICGQRPLFFRAPAGLRNPFLEPVLARFGLRLATWSARGFDTRIDDVDRVKSSLLRGLRAGAILLLHDGHAARTP
QGVPVILAVLPGVLDAAAAAGLRVVTLRQALS

Sequences:

>Translated_272_residues
MRGHPVPDPRWHSTPLIRASLALHGLALVAVVAVPGLWRWALAAVVANHLLIAAAGLWPRSHWLGPNWTRLPAAATARHE
IALTIDDGPDPVVTPRVLDLLDRHAVKATFFCIGELAARYPELCREIVRRGHAVENHSQHHRHYFSVMGPRGLARELQAA
QETLTRICGQRPLFFRAPAGLRNPFLEPVLARFGLRLATWSARGFDTRIDDVDRVKSSLLRGLRAGAILLLHDGHAARTP
QGVPVILAVLPGVLDAAAAAGLRVVTLRQALS
>Mature_272_residues
MRGHPVPDPRWHSTPLIRASLALHGLALVAVVAVPGLWRWALAAVVANHLLIAAAGLWPRSHWLGPNWTRLPAAATARHE
IALTIDDGPDPVVTPRVLDLLDRHAVKATFFCIGELAARYPELCREIVRRGHAVENHSQHHRHYFSVMGPRGLARELQAA
QETLTRICGQRPLFFRAPAGLRNPFLEPVLARFGLRLATWSARGFDTRIDDVDRVKSSLLRGLRAGAILLLHDGHAARTP
QGVPVILAVLPGVLDAAAAAGLRVVTLRQALS

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=168, Percent_Identity=25, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 29718; Mature: 29718

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGHPVPDPRWHSTPLIRASLALHGLALVAVVAVPGLWRWALAAVVANHLLIAAAGLWPR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
SHWLGPNWTRLPAAATARHEIALTIDDGPDPVVTPRVLDLLDRHAVKATFFCIGELAARY
CCCCCCCCCCCCCHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PELCREIVRRGHAVENHSQHHRHYFSVMGPRGLARELQAAQETLTRICGQRPLFFRAPAG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
LRNPFLEPVLARFGLRLATWSARGFDTRIDDVDRVKSSLLRGLRAGAILLLHDGHAARTP
CCCHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
QGVPVILAVLPGVLDAAAAAGLRVVTLRQALS
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC
>Mature Secondary Structure
MRGHPVPDPRWHSTPLIRASLALHGLALVAVVAVPGLWRWALAAVVANHLLIAAAGLWPR
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
SHWLGPNWTRLPAAATARHEIALTIDDGPDPVVTPRVLDLLDRHAVKATFFCIGELAARY
CCCCCCCCCCCCCHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
PELCREIVRRGHAVENHSQHHRHYFSVMGPRGLARELQAAQETLTRICGQRPLFFRAPAG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCC
LRNPFLEPVLARFGLRLATWSARGFDTRIDDVDRVKSSLLRGLRAGAILLLHDGHAARTP
CCCHHHHHHHHHHCCHHEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCC
QGVPVILAVLPGVLDAAAAAGLRVVTLRQALS
CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]