Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is nuoL [H]
Identifier: 91789105
GI number: 91789105
Start: 3435197
End: 3437233
Strand: Reverse
Name: nuoL [H]
Synonym: Bpro_3245
Alternate gene names: 91789105
Gene position: 3437233-3435197 (Counterclockwise)
Preceding gene: 91789106
Following gene: 91789104
Centisome position: 66.1
GC content: 57.88
Gene sequence:
>2037_bases ATGAGCGCAACCCTTTCTGCATCAACATTGCTGGCCGTTCCGCTGGCACCTCTGGCTGGCGCCATGCTGGCTGGTATTCT GGGTACTTCCTTTGGTGGCAACTGGATAGGCCGCCGGCTGTCCCATAGCCTCACCATCCTCGGCGTGCTGGTAGCCTTCA TCATTTCTGCCATGACGCTCAAGAGCGTGGTTCTCGAGGGTGCGCGCTTCAATGAAACGCTCTACACCTGGATGGTGGTG GGCGGCCTGAAAATGGAAGTCGGCTTTCTTGTCGATGGCCTGACGGCCATGATGATGTGCGTGGTGACTTTTGTCTCGCT GATGGTGCATATCTACACGATTGGCTATATGGAAGAAGACGACGGTTACAACCGCTTCTTTGCCTATATTTCGCTCTTCA CTTTCTCCATGCTGATGCTGGTGATGAGCAACAACATGCTGCAGCTGTTCTTTGGCTGGGAAGCGGTGGGCCTGGTGTCC TACCTGCTGATCGGCTTCTGGTTCAACAAGCCGAGCGCCATTTTTGCCAACATGAAGGCCTTCATCGTCAACCGTGTGGG GGACTTCGGCTTCATCCTGGGTATTGGCCTCATTGCAGCCTACGCCGGTACGCTCAACTATGCCGAAGCGTTTGCCAAGG CGGATGAGCTGTCCAAACTGGCGTTCCCGGGGACCGGCTGGATGCTGATTACCGTGATCTGCATCTGCCTCTTTATTGGC GCCATGGGCAAGTCGGCCCAGTTCCCGCTGCATGTGTGGTTGCCCGACTCCATGGAAGGCCCGACCCCGATTTCCGCGTT GATTCACGCCGCGACCATGGTGACTGCCGGCATCTTCATGGTGGCACGCATGTCACCGCTGTTTGAACTCAGCGATACCG CCCTCAGCTTCATCATGGTGATCGGGGCGATCACGGCCCTGTTCATGGGCTTCCTCGGCATCATCCAGAACGACATCAAG CGCGTGGTGGCTTATTCCACCTTGTCGCAGCTCGGCTACATGACGGTGGCCCTGGGTGCTTCCGCCTACTCCGTGGCCGT GTTCCACCTGATGACGCACGCGTTCTTCAAGGCACTACTGTTCCTGGCTGCCGGCTCGGTGATCATCGGCATGCATCACA ACCAGGATATCCGCTGGATGGGGGGCGTGCGCAAGTACATGCCCATCACCTGGATCACCTCGCTGCTCGGATCGCTTGCA CTGATCGGTACGCCGCTGTTCGCAGGTTTTTACTCCAAGGACAGCATCATTGAAGCGGTGCATGAGAGCCACCTGGCGGG TGCCGGTTTCGCGCATTTCGCGGTGCTGGCCGGTGTGTTTGTCACGGCGTTCTATTCCTTCCGCATGTACTTCCTGGTAT TCCACGGCAAGGAGCGTTTTGACCAGAACCCCGATGGACACCACCATGACGCCAGCGAGGAACCGGATCCGCACCACCAT CGCGAAGAACATCAGGCTCCGCACGAGTCACCGTGGGTGGTCACCGTCCCACTGATCCTGCTGGCCATTCCGTCTGTGGT CATCGGCTTCATGACGATTCAGCCCATGCTGTTTGGTGAATTCTTTAAGGATGCGATTTTCTTCAATGCCGAGAAACATC CCGCGATGGCCGAGTTGGCCAAGGCCTTCCACGGCCCGGCGCAAATGGCCTTGCACGGCCTGATGACAGCACCGTTCTGG CTGGCGCTGGCGGGCGTGGTGCTGGCGTATTACATGTACCTGGTCAACCCCGCGCTGCCTGCGCGCATCAAGCGCGCGGT GCAACCCCTCTACACGTTGCTCGAGAACAAATACTACTTCGACTGGTTCAACGAGAACGTGCTGGCCCGCGCAACGCGTG CGATGGGTACCGGTCTGTGGAAGGGCGGCGACGAGGCACTGATCGATGGTGCGCTGGTCAACGGCTCCTGGAAACTGGTG GGCTGGGTGTCCAGCGTGGTGCGAAGGCTGCAGTCGGGTTACATCTACCACTACGCTTTTGGCATGATCATCGGCGTCTT TTTATTGATGACGTATTTCGTTTGGCTGAACCAATAA
Upstream 100 bases:
>100_bases TGTACCCCCACGCTTTTCACTTCGAGCCTTCGGCGCGCAGCCCTTTGAACGACGTTTGGGGCGCACTTCTAATTAAGGCA GCCCTACGGGCGGTTAAACA
Downstream 100 bases:
>100_bases CACGCGAATAATAAGAAGGAAAAACGAGAATGGGTTTGTTGAGCCTTGCCATCTGGACGCCGATTATTTTCGGTGCCGTG TTGTTGGCGCTGGGTCGTGA
Product: proton-translocating NADH-quinone oxidoreductase subunit L
Products: NA
Alternate protein names: NADH dehydrogenase I subunit L; NDH-1 subunit L [H]
Number of amino acids: Translated: 678; Mature: 677
Protein sequence:
>678_residues MSATLSASTLLAVPLAPLAGAMLAGILGTSFGGNWIGRRLSHSLTILGVLVAFIISAMTLKSVVLEGARFNETLYTWMVV GGLKMEVGFLVDGLTAMMMCVVTFVSLMVHIYTIGYMEEDDGYNRFFAYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVS YLLIGFWFNKPSAIFANMKAFIVNRVGDFGFILGIGLIAAYAGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIG AMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMVIGAITALFMGFLGIIQNDIK RVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQDIRWMGGVRKYMPITWITSLLGSLA LIGTPLFAGFYSKDSIIEAVHESHLAGAGFAHFAVLAGVFVTAFYSFRMYFLVFHGKERFDQNPDGHHHDASEEPDPHHH REEHQAPHESPWVVTVPLILLAIPSVVIGFMTIQPMLFGEFFKDAIFFNAEKHPAMAELAKAFHGPAQMALHGLMTAPFW LALAGVVLAYYMYLVNPALPARIKRAVQPLYTLLENKYYFDWFNENVLARATRAMGTGLWKGGDEALIDGALVNGSWKLV GWVSSVVRRLQSGYIYHYAFGMIIGVFLLMTYFVWLNQ
Sequences:
>Translated_678_residues MSATLSASTLLAVPLAPLAGAMLAGILGTSFGGNWIGRRLSHSLTILGVLVAFIISAMTLKSVVLEGARFNETLYTWMVV GGLKMEVGFLVDGLTAMMMCVVTFVSLMVHIYTIGYMEEDDGYNRFFAYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVS YLLIGFWFNKPSAIFANMKAFIVNRVGDFGFILGIGLIAAYAGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIG AMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMVIGAITALFMGFLGIIQNDIK RVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQDIRWMGGVRKYMPITWITSLLGSLA LIGTPLFAGFYSKDSIIEAVHESHLAGAGFAHFAVLAGVFVTAFYSFRMYFLVFHGKERFDQNPDGHHHDASEEPDPHHH REEHQAPHESPWVVTVPLILLAIPSVVIGFMTIQPMLFGEFFKDAIFFNAEKHPAMAELAKAFHGPAQMALHGLMTAPFW LALAGVVLAYYMYLVNPALPARIKRAVQPLYTLLENKYYFDWFNENVLARATRAMGTGLWKGGDEALIDGALVNGSWKLV GWVSSVVRRLQSGYIYHYAFGMIIGVFLLMTYFVWLNQ >Mature_677_residues SATLSASTLLAVPLAPLAGAMLAGILGTSFGGNWIGRRLSHSLTILGVLVAFIISAMTLKSVVLEGARFNETLYTWMVVG GLKMEVGFLVDGLTAMMMCVVTFVSLMVHIYTIGYMEEDDGYNRFFAYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVSY LLIGFWFNKPSAIFANMKAFIVNRVGDFGFILGIGLIAAYAGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIGA MGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMVIGAITALFMGFLGIIQNDIKR VVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALLFLAAGSVIIGMHHNQDIRWMGGVRKYMPITWITSLLGSLAL IGTPLFAGFYSKDSIIEAVHESHLAGAGFAHFAVLAGVFVTAFYSFRMYFLVFHGKERFDQNPDGHHHDASEEPDPHHHR EEHQAPHESPWVVTVPLILLAIPSVVIGFMTIQPMLFGEFFKDAIFFNAEKHPAMAELAKAFHGPAQMALHGLMTAPFWL ALAGVVLAYYMYLVNPALPARIKRAVQPLYTLLENKYYFDWFNENVLARATRAMGTGLWKGGDEALIDGALVNGSWKLVG WVSSVVRRLQSGYIYHYAFGMIIGVFLLMTYFVWLNQ
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1009
COG function: function code CP; NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I subunit 5 family [H]
Homologues:
Organism=Homo sapiens, GI251831117, Length=386, Percent_Identity=40.9326424870466, Blast_Score=281, Evalue=1e-75, Organism=Escherichia coli, GI1788614, Length=545, Percent_Identity=40.5504587155963, Blast_Score=360, Evalue=1e-100, Organism=Escherichia coli, GI1788829, Length=339, Percent_Identity=30.3834808259587, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1788831, Length=403, Percent_Identity=27.7915632754342, Blast_Score=128, Evalue=9e-31, Organism=Escherichia coli, GI1788827, Length=424, Percent_Identity=29.4811320754717, Blast_Score=125, Evalue=7e-30, Organism=Escherichia coli, GI1788613, Length=333, Percent_Identity=26.4264264264264, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI145693160, Length=401, Percent_Identity=24.4389027431421, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI2367154, Length=189, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001750 - InterPro: IPR001516 - InterPro: IPR002128 - InterPro: IPR003945 - InterPro: IPR018393 [H]
Pfam domain/function: PF00361 Oxidored_q1; PF01010 Oxidored_q1_C; PF00662 Oxidored_q1_N [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 74686; Mature: 74555
Theoretical pI: Translated: 7.07; Mature: 7.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.5 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATLSASTLLAVPLAPLAGAMLAGILGTSFGGNWIGRRLSHSLTILGVLVAFIISAMTL CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KSVVLEGARFNETLYTWMVVGGLKMEVGFLVDGLTAMMMCVVTFVSLMVHIYTIGYMEED HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC DGYNRFFAYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKA CCHHHHHHHHHHHHHHHHHHHHCCCCEEEHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH FIVNRVGDFGFILGIGLIAAYAGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIG HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH AMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMV CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH IGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH FLAAGSVIIGMHHNQDIRWMGGVRKYMPITWITSLLGSLALIGTPLFAGFYSKDSIIEAV HHHCCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH HESHLAGAGFAHFAVLAGVFVTAFYSFRMYFLVFHGKERFDQNPDGHHHDASEEPDPHHH HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCCCCCCCCCCCCCCCCCC REEHQAPHESPWVVTVPLILLAIPSVVIGFMTIQPMLFGEFFKDAIFFNAEKHPAMAELA CHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH KAFHGPAQMALHGLMTAPFWLALAGVVLAYYMYLVNPALPARIKRAVQPLYTLLENKYYF HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE DWFNENVLARATRAMGTGLWKGGDEALIDGALVNGSWKLVGWVSSVVRRLQSGYIYHYAF EHHCCHHHHHHHHHHHCCCCCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHH GMIIGVFLLMTYFVWLNQ HHHHHHHHHHHHHHHHCC >Mature Secondary Structure SATLSASTLLAVPLAPLAGAMLAGILGTSFGGNWIGRRLSHSLTILGVLVAFIISAMTL CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH KSVVLEGARFNETLYTWMVVGGLKMEVGFLVDGLTAMMMCVVTFVSLMVHIYTIGYMEED HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC DGYNRFFAYISLFTFSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPSAIFANMKA CCHHHHHHHHHHHHHHHHHHHHCCCCEEEHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH FIVNRVGDFGFILGIGLIAAYAGTLNYAEAFAKADELSKLAFPGTGWMLITVICICLFIG HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH AMGKSAQFPLHVWLPDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFIMV CCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH IGAITALFMGFLGIIQNDIKRVVAYSTLSQLGYMTVALGASAYSVAVFHLMTHAFFKALL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH FLAAGSVIIGMHHNQDIRWMGGVRKYMPITWITSLLGSLALIGTPLFAGFYSKDSIIEAV HHHCCCEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH HESHLAGAGFAHFAVLAGVFVTAFYSFRMYFLVFHGKERFDQNPDGHHHDASEEPDPHHH HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHCCCCCCCCCCCCCCCCCCCCC REEHQAPHESPWVVTVPLILLAIPSVVIGFMTIQPMLFGEFFKDAIFFNAEKHPAMAELA CHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH KAFHGPAQMALHGLMTAPFWLALAGVVLAYYMYLVNPALPARIKRAVQPLYTLLENKYYF HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE DWFNENVLARATRAMGTGLWKGGDEALIDGALVNGSWKLVGWVSSVVRRLQSGYIYHYAF EHHCCHHHHHHHHHHHCCCCCCCCHHHCCCEEECCCHHHHHHHHHHHHHHHHCCHHHHHH GMIIGVFLLMTYFVWLNQ HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10761919 [H]