Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is nuoN [H]
Identifier: 91789103
GI number: 91789103
Start: 3432176
End: 3433678
Strand: Reverse
Name: nuoN [H]
Synonym: Bpro_3243
Alternate gene names: 91789103
Gene position: 3433678-3432176 (Counterclockwise)
Preceding gene: 91789104
Following gene: 91789102
Centisome position: 66.03
GC content: 60.28
Gene sequence:
>1503_bases ATGATTGACAAACTCTCCTGGATCACGGTTTATCCTGAAATCGTCCTCGTGATCATGGCCTGCGTGATCGCGCTGCTGGA TCTCGGGGTGAAAACCCCGCGCCGCACCGGCACCTATGTGCTGACCTTGTTGACGCTGGCCGTGGTTGCTGCCATGGAGG CCTTCTACGCGCTGGGCGGCCAGACTTTCTACGGCTTTGGCGGCATGGTGGTCAGCGACCCGATGGGGGGTTGGCTCAAG TGTTTTTCCAGTATCAGCCTGATGGTGACGCTGGTCTATGGCCGGCCTTATGCGGCCGACCGCGAGATGCTGCGCGGCGG TGAACTGTTCACGCTGAGCCTGTTTGCCTTGCTGGGCATGTTCGTGATGATCTCGGGCCACAACTTCCTCGTGATCTACA TGGGTCTGGAGCTGATGACGCTGTCCAGCTACGCCCTGGTGGCCCTGCGCCGCGACAATGCCACCGCCACGGAAGCCGCG ATGAAGTACTTTGTGCTGGGTGCGCTGGCTTCCGGCTTCCTGCTCTACGGCCTGTCGATGCTGTATGGTGCGACCGGCTC GCTGGACCTCAATGAAGTGTTCAATGCGATTGCCAGCCGCCAGGTCAAGCATCAGGTGCTGGTCTTTGGCCTGGTGTTCA TTGTGGCCGGCCTGGCGTTCAAACTGGGCGCCGTGCCTTTCCACATGTGGTTGCCCGACGTCTACCACGGCGCGCCGACG GCCATCACCCTGCTGATTGGCGGTGCACCGCAGCTGGCGGCTTTTGCGATCTGTATCCGTCTGCTGGTGGAGGGCCTGCT GCCCCTGGCCATTGACTGGCAGCAGATGCTTGCGCTGATGGCCATCGGCTCGCTGATCATTGGCAATCTGGCCGCCGTCG CGCAGTCCAACCTCAAGCGCATGCTGGCGTTTTCAACGATTTCGCAAATGGGTTTCCTGCTGCTTGGCTTGCTGGCCGGG GTGGTCAACGGCAACCAGATGAACACGGAATCAGCCTACAGTGCTGCGATGTTCTATGCGGTGACCTATGTACTCACCAC GCTGGGTGCCTTCGGCATCATCTTGCTGCTGGCCCGTGTCGGGCACGAGTCTGAAGAAATCACCGACCTGGCCGGTCTCA ACCAGCGCAGCCCGCTGTATGCCGGGGTCATGGCCATTGCGATGTTCTCGCTGGCTGGCCTGCCTCCGCTCGTGGGCTTT TATGCCAAGCTGGCCGTGTTGCAGGCGCTGATTTCATCGCAGCAGACCAGCTATATTCTGCTCGCCATCTTTGCCGTGAT GATGTCGCTGATTGGCGCGTTTTACTACCTGCGCGTGGTCAAGGTGATGTACTTTGATGCGCCCGAGGCCCACAATGCGC AACCGATCTCGGCACCCACAGATGCCAAGGCGGTGCTGGCTATCAACGGCGCGCTCATTCTGCTGCTGGGCATGCTTCCC GGTGGCCTGATGACTCTGTGTGCGCAGTCCATCAACAGCATCGTCAAGTCGCTCGGAAACTAG
Upstream 100 bases:
>100_bases GGCATTTATCCCAAGCCGTTTACCGATGTGATGAACCCGTCGGTGGCCGACCTGCTCAAGCATGTCGCGGCATCGAAACT GAACTAGGCAAAGAATTCAG
Downstream 100 bases:
>100_bases ACCTCCCCCATGAGTCAGACTGCTTCAGTCTGGGTGGTTGTATTGCTGGCGTTGCTGTTGGCCAATCTGCCCTTCGTCAG CAACCGCCTTTTCGGGGTGA
Product: NADH dehydrogenase subunit N
Products: NA
Alternate protein names: NADH dehydrogenase I subunit N; NDH-1 subunit N [H]
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MIDKLSWITVYPEIVLVIMACVIALLDLGVKTPRRTGTYVLTLLTLAVVAAMEAFYALGGQTFYGFGGMVVSDPMGGWLK CFSSISLMVTLVYGRPYAADREMLRGGELFTLSLFALLGMFVMISGHNFLVIYMGLELMTLSSYALVALRRDNATATEAA MKYFVLGALASGFLLYGLSMLYGATGSLDLNEVFNAIASRQVKHQVLVFGLVFIVAGLAFKLGAVPFHMWLPDVYHGAPT AITLLIGGAPQLAAFAICIRLLVEGLLPLAIDWQQMLALMAIGSLIIGNLAAVAQSNLKRMLAFSTISQMGFLLLGLLAG VVNGNQMNTESAYSAAMFYAVTYVLTTLGAFGIILLLARVGHESEEITDLAGLNQRSPLYAGVMAIAMFSLAGLPPLVGF YAKLAVLQALISSQQTSYILLAIFAVMMSLIGAFYYLRVVKVMYFDAPEAHNAQPISAPTDAKAVLAINGALILLLGMLP GGLMTLCAQSINSIVKSLGN
Sequences:
>Translated_500_residues MIDKLSWITVYPEIVLVIMACVIALLDLGVKTPRRTGTYVLTLLTLAVVAAMEAFYALGGQTFYGFGGMVVSDPMGGWLK CFSSISLMVTLVYGRPYAADREMLRGGELFTLSLFALLGMFVMISGHNFLVIYMGLELMTLSSYALVALRRDNATATEAA MKYFVLGALASGFLLYGLSMLYGATGSLDLNEVFNAIASRQVKHQVLVFGLVFIVAGLAFKLGAVPFHMWLPDVYHGAPT AITLLIGGAPQLAAFAICIRLLVEGLLPLAIDWQQMLALMAIGSLIIGNLAAVAQSNLKRMLAFSTISQMGFLLLGLLAG VVNGNQMNTESAYSAAMFYAVTYVLTTLGAFGIILLLARVGHESEEITDLAGLNQRSPLYAGVMAIAMFSLAGLPPLVGF YAKLAVLQALISSQQTSYILLAIFAVMMSLIGAFYYLRVVKVMYFDAPEAHNAQPISAPTDAKAVLAINGALILLLGMLP GGLMTLCAQSINSIVKSLGN >Mature_500_residues MIDKLSWITVYPEIVLVIMACVIALLDLGVKTPRRTGTYVLTLLTLAVVAAMEAFYALGGQTFYGFGGMVVSDPMGGWLK CFSSISLMVTLVYGRPYAADREMLRGGELFTLSLFALLGMFVMISGHNFLVIYMGLELMTLSSYALVALRRDNATATEAA MKYFVLGALASGFLLYGLSMLYGATGSLDLNEVFNAIASRQVKHQVLVFGLVFIVAGLAFKLGAVPFHMWLPDVYHGAPT AITLLIGGAPQLAAFAICIRLLVEGLLPLAIDWQQMLALMAIGSLIIGNLAAVAQSNLKRMLAFSTISQMGFLLLGLLAG VVNGNQMNTESAYSAAMFYAVTYVLTTLGAFGIILLLARVGHESEEITDLAGLNQRSPLYAGVMAIAMFSLAGLPPLVGF YAKLAVLQALISSQQTSYILLAIFAVMMSLIGAFYYLRVVKVMYFDAPEAHNAQPISAPTDAKAVLAINGALILLLGMLP GGLMTLCAQSINSIVKSLGN
Specific function: NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocat
COG id: COG1007
COG function: function code C; NADH:ubiquinone oxidoreductase subunit 2 (chain N)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the complex I subunit 2 family [H]
Homologues:
Organism=Homo sapiens, GI251831108, Length=317, Percent_Identity=24.9211356466877, Blast_Score=71, Evalue=2e-12, Organism=Escherichia coli, GI145693160, Length=388, Percent_Identity=33.2474226804124, Blast_Score=194, Evalue=9e-51, Organism=Escherichia coli, GI1788827, Length=392, Percent_Identity=26.7857142857143, Blast_Score=99, Evalue=7e-22, Organism=Escherichia coli, GI1788614, Length=420, Percent_Identity=24.7619047619048, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1788831, Length=325, Percent_Identity=23.0769230769231, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1788613, Length=273, Percent_Identity=27.1062271062271, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI2367154, Length=351, Percent_Identity=24.2165242165242, Blast_Score=65, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010096 - InterPro: IPR001750 [H]
Pfam domain/function: PF00361 Oxidored_q1 [H]
EC number: =1.6.99.5 [H]
Molecular weight: Translated: 53410; Mature: 53410
Theoretical pI: Translated: 7.53; Mature: 7.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDKLSWITVYPEIVLVIMACVIALLDLGVKTPRRTGTYVLTLLTLAVVAAMEAFYALGG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QTFYGFGGMVVSDPMGGWLKCFSSISLMVTLVYGRPYAADREMLRGGELFTLSLFALLGM CEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH FVMISGHNFLVIYMGLELMTLSSYALVALRRDNATATEAAMKYFVLGALASGFLLYGLSM HHHHCCCCEEEEEECHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LYGATGSLDLNEVFNAIASRQVKHQVLVFGLVFIVAGLAFKLGAVPFHMWLPDVYHGAPT HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCC AITLLIGGAPQLAAFAICIRLLVEGLLPLAIDWQQMLALMAIGSLIIGNLAAVAQSNLKR EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLAFSTISQMGFLLLGLLAGVVNGNQMNTESAYSAAMFYAVTYVLTTLGAFGIILLLARV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GHESEEITDLAGLNQRSPLYAGVMAIAMFSLAGLPPLVGFYAKLAVLQALISSQQTSYIL CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHH LAIFAVMMSLIGAFYYLRVVKVMYFDAPEAHNAQPISAPTDAKAVLAINGALILLLGMLP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCC GGLMTLCAQSINSIVKSLGN HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MIDKLSWITVYPEIVLVIMACVIALLDLGVKTPRRTGTYVLTLLTLAVVAAMEAFYALGG CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QTFYGFGGMVVSDPMGGWLKCFSSISLMVTLVYGRPYAADREMLRGGELFTLSLFALLGM CEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH FVMISGHNFLVIYMGLELMTLSSYALVALRRDNATATEAAMKYFVLGALASGFLLYGLSM HHHHCCCCEEEEEECHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH LYGATGSLDLNEVFNAIASRQVKHQVLVFGLVFIVAGLAFKLGAVPFHMWLPDVYHGAPT HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCC AITLLIGGAPQLAAFAICIRLLVEGLLPLAIDWQQMLALMAIGSLIIGNLAAVAQSNLKR EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLAFSTISQMGFLLLGLLAGVVNGNQMNTESAYSAAMFYAVTYVLTTLGAFGIILLLARV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GHESEEITDLAGLNQRSPLYAGVMAIAMFSLAGLPPLVGFYAKLAVLQALISSQQTSYIL CCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHH LAIFAVMMSLIGAFYYLRVVKVMYFDAPEAHNAQPISAPTDAKAVLAINGALILLLGMLP HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCC GGLMTLCAQSINSIVKSLGN HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA