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The map label for this gene is yabJ [H]

Identifier: 91789091

GI number: 91789091

Start: 3420003

End: 3420266

Strand: Reverse

Name: yabJ [H]

Synonym: Bpro_3231

Alternate gene names: 91789091

Gene position: 3420266-3420003 (Counterclockwise)

Preceding gene: 91789094

Following gene: 91789090

Centisome position: 65.77

GC content: 60.61

Gene sequence:

>264_bases
ATGAACGCGGCTCTTTGCGCTGTTTGTCGTCCCCGGACCGGTTTGTGCGGCATCGAGGCCATTCTGAAGGCCGGTGGGTC
CAGTCTCGGGCAAGTCGTCCGTGCCACGGCGTATTTGACGAACATGGACGACTTTGCCGCGGTGAATGCAGTCTATGCCC
GGTACTTTCCGAGTGCATTTCCTGCCCGGTCATGTGTTGAAGTGTCCCGTTTGCCGCTGGGCGCGCTGGTGGAGATCGAC
GTCATAGCCAGAGTCGCCGCCTGA

Upstream 100 bases:

>100_bases
GGTGACGGTGTTTGGGCCGGGGTCAGGCAGCCTGCGAACGCATCTTGGCGATGCCCGCCGGAATGGGAATAATGTTCGTG
ATGACCCTCCCCGAGGCGTC

Downstream 100 bases:

>100_bases
CCCATTTTCTGTTTTCTGGCATGCTCCACGCAGTCGGGCGTGGCATTCGATCCTTTTTCCCTGGTGATGGTGCTTCCTCG
CTGCTGCGACATGAAGTAAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MNAALCAVCRPRTGLCGIEAILKAGGSSLGQVVRATAYLTNMDDFAAVNAVYARYFPSAFPARSCVEVSRLPLGALVEID
VIARVAA

Sequences:

>Translated_87_residues
MNAALCAVCRPRTGLCGIEAILKAGGSSLGQVVRATAYLTNMDDFAAVNAVYARYFPSAFPARSCVEVSRLPLGALVEID
VIARVAA
>Mature_87_residues
MNAALCAVCRPRTGLCGIEAILKAGGSSLGQVVRATAYLTNMDDFAAVNAVYARYFPSAFPARSCVEVSRLPLGALVEID
VIARVAA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87082396, Length=75, Percent_Identity=44, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI87082213, Length=75, Percent_Identity=40, Blast_Score=69, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=76, Percent_Identity=46.0526315789474, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982075, Length=76, Percent_Identity=46.0526315789474, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982068, Length=76, Percent_Identity=46.0526315789474, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=67, Percent_Identity=46.2686567164179, Blast_Score=67, Evalue=4e-13,
Organism=Drosophila melanogaster, GI19921376, Length=72, Percent_Identity=48.6111111111111, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 9076; Mature: 9076

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAALCAVCRPRTGLCGIEAILKAGGSSLGQVVRATAYLTNMDDFAAVNAVYARYFPSAF
CCCCEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PARSCVEVSRLPLGALVEIDVIARVAA
CCHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNAALCAVCRPRTGLCGIEAILKAGGSSLGQVVRATAYLTNMDDFAAVNAVYARYFPSAF
CCCCEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
PARSCVEVSRLPLGALVEIDVIARVAA
CCHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]