Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is phnW1
Identifier: 91789076
GI number: 91789076
Start: 3403111
End: 3404235
Strand: Reverse
Name: phnW1
Synonym: Bpro_3216
Alternate gene names: 91789076
Gene position: 3404235-3403111 (Counterclockwise)
Preceding gene: 91789077
Following gene: 91789075
Centisome position: 65.46
GC content: 65.07
Gene sequence:
>1125_bases ATGACAACCGACGCCATTCTTCTGACCCCCGGACCGCTGACCACGTCGAGCCGCACCAAGCAAAGCATGCTGCGTGACTG GGGCTCCTGGGATACGGATTTCAATGCCATCACCGCGCGCCTGCGCCAGGGCCTGCTGCGCATCGTGCACGGCGAAGGCA CGCATGAGTGCGTTCCCCTGCAGGGCAGCGGTACTTTTTCAGTCGAGGCGGCCATTGGCACGCTGGTGCCGCCGGGCGAA AAAGGGGGGCATGTGCTGGTGCCGGTCAACGGCGCCTATTGCCAGCGCATCGCCAAAATCTGCAAGGTGCTGGGCCGCAA GCTCACCACCTTCGAGTATGCGGAAGATGCGCAAATCCGACCCGAAGACATTGACCGGCTGCTCGCCAAGGACCCCTCCA TCACCCACGTCGCGCTGGTGCACTGCGAAACCAGCACGGGTATTCTGAACCCGCTGCACGAGATTGCACTGGTCGTGCAG CGCCACGGCAAGGGCTTGATCGTCGATGCGATGAGCTCGTTCGGCGCGCTGGAGATTGATGCACGCAAGACGCCGTTCGA CGCCGTGGTCGCCGCGTCGGGCAAGTGCCTGGAAGGCGTTCCCGGTATGGGCTTTGTGCTGGCGCGCCGCGCCGCACTGG AGCGCTGCGAGGGCAACTGCCATTCGCTGGCGATGGACCTGTACGACCAGTGGGTCTACATGAACAAGACCACGCAGTGG CGCTTTACCCCGCCGACCCATGTGGTGGCCGCGCTGGACGCCGCGCTCACGCAGTATTTCGAACAAGGCGGGCTGGCCGC GCGCGGCGGCGCCTATGCCAAGAATTGCCGCGAGCTCATCAGTGGCCTGGCCGGGCTGGGCTTGCGCAGCTTCCTGCCCG CGGCGATCCAGGCGCCCATCATCGTGACCTTCCATGCGCCCGCCAGCCCGGCCTACGAGTTCAAAGCCTTTTACAACGCG GTCAGGCAGCGCGGCTATATTCTTTACCCCGGAAAACTGACCGCGGTGGAGACTTTTCGCGTCGGTTGCATGGGCCAGCT CGGCGCGCGCGGCATGGCGGGCGCCGTGGAAGCGGTTCGGGATGCGCTGCAGGAAATGGGGCTGGAGCTTGCCAACGCCG AGTGA
Upstream 100 bases:
>100_bases AGACCCAGGCGTGGCGAAACGTCGCCCGCCAATGAAGCCCGATCCCTTCCGACTTGCCACTTTTCCGTTTTTCCATTTGC CAAACATCCAAGGAGCTTTC
Downstream 100 bases:
>100_bases CGAGGCGCAGCATCCCGGAGGTGATTTCAAGTATTTGGCGGAACAGAGCTCCCGCGAAATTTCAATGCGGCCTTACGGTG GAAACGTCACCGCTTTTTGC
Product: 2-aminoethylphosphonate--pyruvate transaminase
Products: NA
Alternate protein names: 2-aminoethylphosphonate aminotransferase 1; AEP transaminase 1; AEPT 1
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTTDAILLTPGPLTTSSRTKQSMLRDWGSWDTDFNAITARLRQGLLRIVHGEGTHECVPLQGSGTFSVEAAIGTLVPPGE KGGHVLVPVNGAYCQRIAKICKVLGRKLTTFEYAEDAQIRPEDIDRLLAKDPSITHVALVHCETSTGILNPLHEIALVVQ RHGKGLIVDAMSSFGALEIDARKTPFDAVVAASGKCLEGVPGMGFVLARRAALERCEGNCHSLAMDLYDQWVYMNKTTQW RFTPPTHVVAALDAALTQYFEQGGLAARGGAYAKNCRELISGLAGLGLRSFLPAAIQAPIIVTFHAPASPAYEFKAFYNA VRQRGYILYPGKLTAVETFRVGCMGQLGARGMAGAVEAVRDALQEMGLELANAE
Sequences:
>Translated_374_residues MTTDAILLTPGPLTTSSRTKQSMLRDWGSWDTDFNAITARLRQGLLRIVHGEGTHECVPLQGSGTFSVEAAIGTLVPPGE KGGHVLVPVNGAYCQRIAKICKVLGRKLTTFEYAEDAQIRPEDIDRLLAKDPSITHVALVHCETSTGILNPLHEIALVVQ RHGKGLIVDAMSSFGALEIDARKTPFDAVVAASGKCLEGVPGMGFVLARRAALERCEGNCHSLAMDLYDQWVYMNKTTQW RFTPPTHVVAALDAALTQYFEQGGLAARGGAYAKNCRELISGLAGLGLRSFLPAAIQAPIIVTFHAPASPAYEFKAFYNA VRQRGYILYPGKLTAVETFRVGCMGQLGARGMAGAVEAVRDALQEMGLELANAE >Mature_373_residues TTDAILLTPGPLTTSSRTKQSMLRDWGSWDTDFNAITARLRQGLLRIVHGEGTHECVPLQGSGTFSVEAAIGTLVPPGEK GGHVLVPVNGAYCQRIAKICKVLGRKLTTFEYAEDAQIRPEDIDRLLAKDPSITHVALVHCETSTGILNPLHEIALVVQR HGKGLIVDAMSSFGALEIDARKTPFDAVVAASGKCLEGVPGMGFVLARRAALERCEGNCHSLAMDLYDQWVYMNKTTQWR FTPPTHVVAALDAALTQYFEQGGLAARGGAYAKNCRELISGLAGLGLRSFLPAAIQAPIIVTFHAPASPAYEFKAFYNAV RQRGYILYPGKLTAVETFRVGCMGQLGARGMAGAVEAVRDALQEMGLELANAE
Specific function: Involved in phosphonate degradation
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily
Homologues:
Organism=Homo sapiens, GI4557289, Length=373, Percent_Identity=24.6648793565684, Blast_Score=79, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17536281, Length=309, Percent_Identity=24.5954692556634, Blast_Score=80, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PHNW1_POLSJ (Q128B2)
Other databases:
- EMBL: CP000316 - RefSeq: YP_550028.1 - ProteinModelPortal: Q128B2 - SMR: Q128B2 - STRING: Q128B2 - GeneID: 4014101 - GenomeReviews: CP000316_GR - KEGG: pol:Bpro_3216 - NMPDR: fig|296591.1.peg.4746 - eggNOG: COG0075 - HOGENOM: HBG423997 - OMA: HSLAMDL - ProtClustDB: PRK13479 - BioCyc: PSP296591:BPRO_3216-MONOMER - HAMAP: MF_01376 - InterPro: IPR017688 - InterPro: IPR000192 - InterPro: IPR012703 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 - Gene3D: G3DSA:3.40.640.10 - Gene3D: G3DSA:3.90.1150.10 - TIGRFAMs: TIGR03301 - TIGRFAMs: TIGR02326
Pfam domain/function: PF00266 Aminotran_5; SSF53383 PyrdxlP-dep_Trfase_major
EC number: =2.6.1.37
Molecular weight: Translated: 40253; Mature: 40122
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTDAILLTPGPLTTSSRTKQSMLRDWGSWDTDFNAITARLRQGLLRIVHGEGTHECVPL CCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEECCCCCCEEEEE QGSGTFSVEAAIGTLVPPGEKGGHVLVPVNGAYCQRIAKICKVLGRKLTTFEYAEDAQIR CCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCC PEDIDRLLAKDPSITHVALVHCETSTGILNPLHEIALVVQRHGKGLIVDAMSSFGALEID HHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECHHCCCCEEEC ARKTPFDAVVAASGKCLEGVPGMGFVLARRAALERCEGNCHSLAMDLYDQWVYMNKTTQW CCCCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCEE RFTPPTHVVAALDAALTQYFEQGGLAARGGAYAKNCRELISGLAGLGLRSFLPAAIQAPI EECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCE IVTFHAPASPAYEFKAFYNAVRQRGYILYPGKLTAVETFRVGCMGQLGARGMAGAVEAVR EEEEECCCCCHHHHHHHHHHHHHCCEEEECCCEEEEHHHHHCCCHHCCCCCHHHHHHHHH DALQEMGLELANAE HHHHHCCCHHCCCC >Mature Secondary Structure TTDAILLTPGPLTTSSRTKQSMLRDWGSWDTDFNAITARLRQGLLRIVHGEGTHECVPL CCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEECCCCCCEEEEE QGSGTFSVEAAIGTLVPPGEKGGHVLVPVNGAYCQRIAKICKVLGRKLTTFEYAEDAQIR CCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCC PEDIDRLLAKDPSITHVALVHCETSTGILNPLHEIALVVQRHGKGLIVDAMSSFGALEID HHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECHHCCCCEEEC ARKTPFDAVVAASGKCLEGVPGMGFVLARRAALERCEGNCHSLAMDLYDQWVYMNKTTQW CCCCCHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEECCCCEE RFTPPTHVVAALDAALTQYFEQGGLAARGGAYAKNCRELISGLAGLGLRSFLPAAIQAPI EECCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCE IVTFHAPASPAYEFKAFYNAVRQRGYILYPGKLTAVETFRVGCMGQLGARGMAGAVEAVR EEEEECCCCCHHHHHHHHHHHHHCCEEEECCCEEEEHHHHHCCCHHCCCCCHHHHHHHHH DALQEMGLELANAE HHHHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA