Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91788982
Identifier: 91788982
GI number: 91788982
Start: 3296184
End: 3297215
Strand: Reverse
Name: 91788982
Synonym: Bpro_3122
Alternate gene names: NA
Gene position: 3297215-3296184 (Counterclockwise)
Preceding gene: 91788993
Following gene: 91788981
Centisome position: 63.4
GC content: 64.44
Gene sequence:
>1032_bases ATGACCCCGCCCCCTGTCAAACTGCTGCAACTCCCGTTCACATCCATCACCCAATCCATCACCCGCCTGGCCTGGGTCTG TGGTGTGGCGCTGGCCACGCTCGTGCCTGCCGTGCAGGGCCAGCCGGTCGGCGCCTATCCCAACAAGCCCATCAAGCTGA TTGTTCCGTTTCCTGCCGGTGGTGGTGGCGACACGCTGGCGCGCCTAGTCATGCTGCGCGCCGCCAAAGAACTTGGCCAG CCCATCGTGGTGGAAAACCTCGGGGGTGCGGGCGGTAATGTAGGCAGCGTCACTGCCGCGAAAGCCCCTGCTGATGGCTA TACCCTGCTGTATGGCACCAACGGCACGCATGCCATCAACCATGCCATCTACAAGTCGCCGGGGTTTGACCCGGTGCGCG ATTTTGAACCGGTGAGCCAGCTCACGCGCATTGCCGCCATGGTGGTGGTCAGGCCCACGCTGCAAGTCAACTCGATGGCC GAACTCACCCAGCTGCTCAAAGCCCACCCCGGCAAATACACGTTCGGTTCCGCAGGCAATGGCACCACCTCACACCTCGC GGGTGAAATCTACAAATCCCGTGCGGGACTGGCTGTCGTCCATATTCCCTACCGTGGCGGCGCGCAGGCCATGACCGACC TGATCGGCGGACAGGTAGACCTGATGATTGAGGTGATGCCCAACGCGGCGCCACAGGCCAAAAGCGGGCGCGTCAAACCC CTGGCCGTGACCACTGGCACGCGCGTCGCAGGCTGGCCCGATATACCCACCCTTGCCGAGTCGGGTCTCCCGGGCCTGGA CGTCAGCGCCTGGGACGCGATCTTTGTACCGGCCGGTACGCCGCGGCCTGTTGTTGATCGCCTGAGCCAGGCTATTCATA AAGCGCTGGCCGACCCTGAACTGCGCAATCAGCTGCAGTCACGCGGGGCCGAAGTGGCGCCCGGCACACCCGAAGAGCTG GCCCGGCACATGGCCAGCAGCCGGATACTCTGGGGCGATGCCGTCAGACGTTCGGGCGCTGCGCTTGACTGA
Upstream 100 bases:
>100_bases TAATATCGCCGTTATTGCATGCAAAAATATAAGTCATCTAAGAATATTTGATGCCCGCCTGGGCCCAGCCCAGTGATTAC CAGTCCTTCCGGAAGACGCC
Downstream 100 bases:
>100_bases GCCTTTATTCCCTGATTGATTCCTTGATTGATTCCCTGTATTCCGTTCAGACCTGATTGCCATGAAACCTGCCTCCTCCG AAATCGCATCTTCCGGCCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 343; Mature: 342
Protein sequence:
>343_residues MTPPPVKLLQLPFTSITQSITRLAWVCGVALATLVPAVQGQPVGAYPNKPIKLIVPFPAGGGGDTLARLVMLRAAKELGQ PIVVENLGGAGGNVGSVTAAKAPADGYTLLYGTNGTHAINHAIYKSPGFDPVRDFEPVSQLTRIAAMVVVRPTLQVNSMA ELTQLLKAHPGKYTFGSAGNGTTSHLAGEIYKSRAGLAVVHIPYRGGAQAMTDLIGGQVDLMIEVMPNAAPQAKSGRVKP LAVTTGTRVAGWPDIPTLAESGLPGLDVSAWDAIFVPAGTPRPVVDRLSQAIHKALADPELRNQLQSRGAEVAPGTPEEL ARHMASSRILWGDAVRRSGAALD
Sequences:
>Translated_343_residues MTPPPVKLLQLPFTSITQSITRLAWVCGVALATLVPAVQGQPVGAYPNKPIKLIVPFPAGGGGDTLARLVMLRAAKELGQ PIVVENLGGAGGNVGSVTAAKAPADGYTLLYGTNGTHAINHAIYKSPGFDPVRDFEPVSQLTRIAAMVVVRPTLQVNSMA ELTQLLKAHPGKYTFGSAGNGTTSHLAGEIYKSRAGLAVVHIPYRGGAQAMTDLIGGQVDLMIEVMPNAAPQAKSGRVKP LAVTTGTRVAGWPDIPTLAESGLPGLDVSAWDAIFVPAGTPRPVVDRLSQAIHKALADPELRNQLQSRGAEVAPGTPEEL ARHMASSRILWGDAVRRSGAALD >Mature_342_residues TPPPVKLLQLPFTSITQSITRLAWVCGVALATLVPAVQGQPVGAYPNKPIKLIVPFPAGGGGDTLARLVMLRAAKELGQP IVVENLGGAGGNVGSVTAAKAPADGYTLLYGTNGTHAINHAIYKSPGFDPVRDFEPVSQLTRIAAMVVVRPTLQVNSMAE LTQLLKAHPGKYTFGSAGNGTTSHLAGEIYKSRAGLAVVHIPYRGGAQAMTDLIGGQVDLMIEVMPNAAPQAKSGRVKPL AVTTGTRVAGWPDIPTLAESGLPGLDVSAWDAIFVPAGTPRPVVDRLSQAIHKALADPELRNQLQSRGAEVAPGTPEELA RHMASSRILWGDAVRRSGAALD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35748; Mature: 35616
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPPVKLLQLPFTSITQSITRLAWVCGVALATLVPAVQGQPVGAYPNKPIKLIVPFPAG CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC GGGDTLARLVMLRAAKELGQPIVVENLGGAGGNVGSVTAAKAPADGYTLLYGTNGTHAIN CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCCCEEEEEECCCCHHHH HAIYKSPGFDPVRDFEPVSQLTRIAAMVVVRPTLQVNSMAELTQLLKAHPGKYTFGSAGN HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCC GTTSHLAGEIYKSRAGLAVVHIPYRGGAQAMTDLIGGQVDLMIEVMPNAAPQAKSGRVKP CCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEE LAVTTGTRVAGWPDIPTLAESGLPGLDVSAWDAIFVPAGTPRPVVDRLSQAIHKALADPE EEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHH LRNQLQSRGAEVAPGTPEELARHMASSRILWGDAVRRSGAALD HHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEHHHHHCCCCCCC >Mature Secondary Structure TPPPVKLLQLPFTSITQSITRLAWVCGVALATLVPAVQGQPVGAYPNKPIKLIVPFPAG CCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC GGGDTLARLVMLRAAKELGQPIVVENLGGAGGNVGSVTAAKAPADGYTLLYGTNGTHAIN CCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCCCEEEEEECCCCHHHH HAIYKSPGFDPVRDFEPVSQLTRIAAMVVVRPTLQVNSMAELTQLLKAHPGKYTFGSAGN HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEECCCCCC GTTSHLAGEIYKSRAGLAVVHIPYRGGAQAMTDLIGGQVDLMIEVMPNAAPQAKSGRVKP CCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCEE LAVTTGTRVAGWPDIPTLAESGLPGLDVSAWDAIFVPAGTPRPVVDRLSQAIHKALADPE EEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCHH LRNQLQSRGAEVAPGTPEELARHMASSRILWGDAVRRSGAALD HHHHHHHCCCCCCCCCHHHHHHHHHHCCEEEHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]