Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91788968
Identifier: 91788968
GI number: 91788968
Start: 3280907
End: 3281818
Strand: Reverse
Name: 91788968
Synonym: Bpro_3108
Alternate gene names: NA
Gene position: 3281818-3280907 (Counterclockwise)
Preceding gene: 91788969
Following gene: 91788967
Centisome position: 63.11
GC content: 66.23
Gene sequence:
>912_bases ATGAGCACCCTCACGGACGCGACGCGGGCCGAGCTGCTGCTCGATGCGCGCAATGCCACGGGCGAAAGCCCGGTCTGGCA TGCCGCCGAGCAGGCGCTGTATTGGGTCGACATTCCGGCGCGCAAGCTGTGCCGCTGGGAGGCCGCAACAGGGCGCACCA GCCACTGGCTGGCGCCTGAAATGCTCGCTTGCATTGCCCCGCGGGGCACGCAGTCGGGCTGGGTGGCGGGCATGGAAACT GGCGTATTCGAATTGCAGCCGCATGATGGCGGCCGTCTTGATGTCCGGCTGCTGGCCGGGGTGCGGCATGCGCAGGCTGG CATGCGCTTCAACGACGGCCGCTGCGACCGCCAGGGGCGCTTCCTGGCCGGCACCATGGTGCTCGATATGGCTCTCGGTT CCCGTGCGGGTTGCCTCTACAGCCATGAAAAAAATGGCGAGCTGAGAAACCTCCTGAGCGGCTTCATCACGCCCAATGGC CTGGCTTTCAGCCCTGACGGGCGCACCATGTACCTGTCGGACTCCCATCCGTCAGTGCAGACCATCTGGGCCTTCGATTA CGACACCGACACCGGCACGCCCACGAACCAGCGGGTGTTTGTTGACATGAAGCCGCTGCCGGGGCGACCCGATGGCGCCG CTGTCGACGAGGAGGGCTGTTACTGGATTTGCGGCAACGATGCCGGTCTGGTTCACCGCTTCACGCCTGCGGGCAAGCTG GACCGCTCCATTGCAGTTCCGGCCGCGAAGCCTTCGATGTGCTGCTTCGGCGGCGCACGCATGGACCAGCTCTTCATCGC CTCCATCACCCCCGCGCAACCTATCGCCGGCTATGAGCCCGCGCTGGCGGGCGCGGTGTTCGTGGCCCATCCCGGCGTTC GCGGCATTGCCGAAACGCCGTTTTCGCAGTAG
Upstream 100 bases:
>100_bases GCGGTGTATGCGCGCACCCCCCAGCCGGATCTGAATGATCCGGTGGTTCAATACCAGGGCGGCGGTTTTGTCGTGGCCGG CCCCTTCGGCGACTGACCGC
Downstream 100 bases:
>100_bases CTTTCCCATTTCAACGCGCAACCATAACTCAGGAGACATCGCATCATGACAAACAGAACTCCCCGCATTTCGGCTATTCG CTCGGCCGCCCTTGCCGCTT
Product: gluconolactonase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MSTLTDATRAELLLDARNATGESPVWHAAEQALYWVDIPARKLCRWEAATGRTSHWLAPEMLACIAPRGTQSGWVAGMET GVFELQPHDGGRLDVRLLAGVRHAQAGMRFNDGRCDRQGRFLAGTMVLDMALGSRAGCLYSHEKNGELRNLLSGFITPNG LAFSPDGRTMYLSDSHPSVQTIWAFDYDTDTGTPTNQRVFVDMKPLPGRPDGAAVDEEGCYWICGNDAGLVHRFTPAGKL DRSIAVPAAKPSMCCFGGARMDQLFIASITPAQPIAGYEPALAGAVFVAHPGVRGIAETPFSQ
Sequences:
>Translated_303_residues MSTLTDATRAELLLDARNATGESPVWHAAEQALYWVDIPARKLCRWEAATGRTSHWLAPEMLACIAPRGTQSGWVAGMET GVFELQPHDGGRLDVRLLAGVRHAQAGMRFNDGRCDRQGRFLAGTMVLDMALGSRAGCLYSHEKNGELRNLLSGFITPNG LAFSPDGRTMYLSDSHPSVQTIWAFDYDTDTGTPTNQRVFVDMKPLPGRPDGAAVDEEGCYWICGNDAGLVHRFTPAGKL DRSIAVPAAKPSMCCFGGARMDQLFIASITPAQPIAGYEPALAGAVFVAHPGVRGIAETPFSQ >Mature_302_residues STLTDATRAELLLDARNATGESPVWHAAEQALYWVDIPARKLCRWEAATGRTSHWLAPEMLACIAPRGTQSGWVAGMETG VFELQPHDGGRLDVRLLAGVRHAQAGMRFNDGRCDRQGRFLAGTMVLDMALGSRAGCLYSHEKNGELRNLLSGFITPNGL AFSPDGRTMYLSDSHPSVQTIWAFDYDTDTGTPTNQRVFVDMKPLPGRPDGAAVDEEGCYWICGNDAGLVHRFTPAGKLD RSIAVPAAKPSMCCFGGARMDQLFIASITPAQPIAGYEPALAGAVFVAHPGVRGIAETPFSQ
Specific function: Unknown
COG id: COG3386
COG function: function code G; Gluconolactonase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the SMP-30/CGR1 family [H]
Homologues:
Organism=Homo sapiens, GI23111021, Length=302, Percent_Identity=31.1258278145695, Blast_Score=143, Evalue=2e-34, Organism=Homo sapiens, GI4759036, Length=302, Percent_Identity=31.1258278145695, Blast_Score=143, Evalue=2e-34, Organism=Drosophila melanogaster, GI45551448, Length=304, Percent_Identity=26.6447368421053, Blast_Score=100, Evalue=9e-22, Organism=Drosophila melanogaster, GI24646912, Length=290, Percent_Identity=26.2068965517241, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24646910, Length=290, Percent_Identity=26.2068965517241, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24641471, Length=299, Percent_Identity=26.4214046822742, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI18860103, Length=299, Percent_Identity=26.4214046822742, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24641469, Length=299, Percent_Identity=26.4214046822742, Blast_Score=99, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR013658 - InterPro: IPR005511 [H]
Pfam domain/function: PF08450 SGL [H]
EC number: NA
Molecular weight: Translated: 32679; Mature: 32548
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLTDATRAELLLDARNATGESPVWHAAEQALYWVDIPARKLCRWEAATGRTSHWLAPE CCCCCHHHHHEEEEECCCCCCCCCHHHHHHHEEEEEECCHHHHHEECCCCCCCCCCCCHH MLACIAPRGTQSGWVAGMETGVFELQPHDGGRLDVRLLAGVRHAQAGMRFNDGRCDRQGR HHHHHCCCCCCCCEEEEECCCEEEECCCCCCEEEEEEECCCHHHHCCCEECCCCCCCCCC FLAGTMVLDMALGSRAGCLYSHEKNGELRNLLSGFITPNGLAFSPDGRTMYLSDSHPSVQ EEEHHEEEEHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEE TIWAFDYDTDTGTPTNQRVFVDMKPLPGRPDGAAVDEEGCYWICGNDAGLVHRFTPAGKL EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCEEEECCCCCEEEEECCCCCC DRSIAVPAAKPSMCCFGGARMDQLFIASITPAQPIAGYEPALAGAVFVAHPGVRGIAETP CCEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHCEEEEECCCCCCCCCCC FSQ CCC >Mature Secondary Structure STLTDATRAELLLDARNATGESPVWHAAEQALYWVDIPARKLCRWEAATGRTSHWLAPE CCCCHHHHHEEEEECCCCCCCCCHHHHHHHEEEEEECCHHHHHEECCCCCCCCCCCCHH MLACIAPRGTQSGWVAGMETGVFELQPHDGGRLDVRLLAGVRHAQAGMRFNDGRCDRQGR HHHHHCCCCCCCCEEEEECCCEEEECCCCCCEEEEEEECCCHHHHCCCEECCCCCCCCCC FLAGTMVLDMALGSRAGCLYSHEKNGELRNLLSGFITPNGLAFSPDGRTMYLSDSHPSVQ EEEHHEEEEHHHCCCCCEEEECCCCCHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEE TIWAFDYDTDTGTPTNQRVFVDMKPLPGRPDGAAVDEEGCYWICGNDAGLVHRFTPAGKL EEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCEEEECCCCCEEEEECCCCCC DRSIAVPAAKPSMCCFGGARMDQLFIASITPAQPIAGYEPALAGAVFVAHPGVRGIAETP CCEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCHHHCEEEEECCCCCCCCCCC FSQ CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA