Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is 91788939

Identifier: 91788939

GI number: 91788939

Start: 3247168

End: 3248574

Strand: Reverse

Name: 91788939

Synonym: Bpro_3079

Alternate gene names: NA

Gene position: 3248574-3247168 (Counterclockwise)

Preceding gene: 91788940

Following gene: 91788938

Centisome position: 62.47

GC content: 61.34

Gene sequence:

>1407_bases
ATGAGAGTTTTGCGCTGGTGTGCCGCCCTGGCCCTGCTGTGCTGTTTGCCCGGGCTGGCATTGGCCGCCGAGATCGACGG
TACCAGGCTGCACTGGATATGGGCGATACCTTTCGTGGGAATTTTGCTGTCGATTGCCGTGATGCCGCTCGCGCTTCCGG
CTTTTTGGCATCACCATTTCGGCAAGGTTTCAGCGGCCTGGGCACTGGCATTTTTTCTGCCGTTTGCCGCGGTCTTCGGG
CCGGCTTTGGCGGGCAGCAGTTTTGTGCATGCGCTGCTGGCCGAATACGTTCCCTTTATCGTCTTGCTGACCGCGCTGTA
CACCGTGTCCGGCGGCATTTTCATTCGGGGCAACCTGCATGGAAGCCCGGGCCTCAACACCGCGATTCTGGCAATCGGCA
CCGTGCTGGCCAGCCTGATGGGAACCACCGGCGCGTCCATGTTGATGATTCGCCCGCTGATTCGGGCCAATGACAACCGC
GTTCACAAGGCGCATGTGGTGGTGTTCTTCATTTTCCTGGTGTCCAACGCCGGCGGCTCGCTGACGCCGCTGGGAGACCC
GCCCCTGTTTCTCGGTTTTCTGAAGGGTGTCGATTTCTTCTGGACCGTCAGCCACATCTTTCCGGAAACGCTGTTCCTGG
CGGGCAGCCTGCTGGGCATTTTTTACCTGCTGGACCGCTGGTACTACAGCAAGGAGGGTGTGCTGCCGGTCGATCCCACC
CCCGACACCCGGCGCATCGGCTTTGACGGCGCGCGGAATTTCTGGTTGCTGGCCGCCGTTGTGGCCCTGGTACTCGTTAG
CGGTTTCTGGAAGTCCGCCGTGGTGTTCAATGTCCTGGGCACCGAGGTGGGCCTGCCGGGCCTGCTGCGCGACGTCGGCC
TGGTGGCGGTGACCTTGATTTCCCTTCGCCTTACGCCGGACAGTGTCCATGCGGACAACCAGTTTTCATGGGGGCCGATG
CAGGAAGTCGCCAAGCTGTTTGCCGGCATCTTTTTGACCATCATCCCGGTCATTGCCATGCTCAGGGCGGGCATCAACGG
CCCGTTCAGCGCCATCATCTCGGCCGTGACCCGGCCCGATGGCCAGCCTGATCCGGCCATGTACTTCTGGGCAACCGGGG
TGCTGAGTTCTTTCCTGGACAATGCGCCGACCTACCTGGTGTTCTTCAACACGGCGGGCGGCGACCCCCAAGCGCTGATG
ACGACGCTGGCTCCTACGCTGGCGGCCATTTCAGCGGGTGCGGTGTTCATGGGTGCCAACTCCTACATTGGCAATGCCCC
CAACCTGATGGTCAAGGCCGTGGCAGAAGACCGCGGTGTGCGTATGCCCGGCTTTTTTGGCTATATGGCCTGGTCGGGTG
CGGTCCTGATTCCCCTGTTTGTCCTCATCACCTTCATCTGGTTCTAG

Upstream 100 bases:

>100_bases
CTTGCCCGCTGGCCAGCGAGCGCGGGGCCATGCCCGCCACGAAAACTCTGGTCAGAAGTTGAGAAGTTGAACAAATGAAT
AAAAGAATGAGGAGACAACA

Downstream 100 bases:

>100_bases
TCGACCATTCCAGATTGACCATTCAAGCCAACCATTCAACCGTTCAAGCAAAGAAAGTCGAGATCTTCTCATGAGCAAAC
CCAAAATTCTGGTCGCACGA

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; Arsenite-Anitmonite Efflux Pump ArsB Family; Na+ Antiporter; Na+/H+ Antiporter; Transporter Uit6 Family; Signal Peptide; ArsB Family Arsenate Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases; Na+/H+ Antiporter NhaD; Arsenite Transport Protein ArsB; NA+/H+ Antiporter Permease; Na+/H+ Antiporter NhaD-Like Permease; Na+/H+ Antiporter NhaD And Related Arsenite Permeases-Like; Na+/H+ Antiporter NhaD Or Related Arsenite Permease

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MRVLRWCAALALLCCLPGLALAAEIDGTRLHWIWAIPFVGILLSIAVMPLALPAFWHHHFGKVSAAWALAFFLPFAAVFG
PALAGSSFVHALLAEYVPFIVLLTALYTVSGGIFIRGNLHGSPGLNTAILAIGTVLASLMGTTGASMLMIRPLIRANDNR
VHKAHVVVFFIFLVSNAGGSLTPLGDPPLFLGFLKGVDFFWTVSHIFPETLFLAGSLLGIFYLLDRWYYSKEGVLPVDPT
PDTRRIGFDGARNFWLLAAVVALVLVSGFWKSAVVFNVLGTEVGLPGLLRDVGLVAVTLISLRLTPDSVHADNQFSWGPM
QEVAKLFAGIFLTIIPVIAMLRAGINGPFSAIISAVTRPDGQPDPAMYFWATGVLSSFLDNAPTYLVFFNTAGGDPQALM
TTLAPTLAAISAGAVFMGANSYIGNAPNLMVKAVAEDRGVRMPGFFGYMAWSGAVLIPLFVLITFIWF

Sequences:

>Translated_468_residues
MRVLRWCAALALLCCLPGLALAAEIDGTRLHWIWAIPFVGILLSIAVMPLALPAFWHHHFGKVSAAWALAFFLPFAAVFG
PALAGSSFVHALLAEYVPFIVLLTALYTVSGGIFIRGNLHGSPGLNTAILAIGTVLASLMGTTGASMLMIRPLIRANDNR
VHKAHVVVFFIFLVSNAGGSLTPLGDPPLFLGFLKGVDFFWTVSHIFPETLFLAGSLLGIFYLLDRWYYSKEGVLPVDPT
PDTRRIGFDGARNFWLLAAVVALVLVSGFWKSAVVFNVLGTEVGLPGLLRDVGLVAVTLISLRLTPDSVHADNQFSWGPM
QEVAKLFAGIFLTIIPVIAMLRAGINGPFSAIISAVTRPDGQPDPAMYFWATGVLSSFLDNAPTYLVFFNTAGGDPQALM
TTLAPTLAAISAGAVFMGANSYIGNAPNLMVKAVAEDRGVRMPGFFGYMAWSGAVLIPLFVLITFIWF
>Mature_468_residues
MRVLRWCAALALLCCLPGLALAAEIDGTRLHWIWAIPFVGILLSIAVMPLALPAFWHHHFGKVSAAWALAFFLPFAAVFG
PALAGSSFVHALLAEYVPFIVLLTALYTVSGGIFIRGNLHGSPGLNTAILAIGTVLASLMGTTGASMLMIRPLIRANDNR
VHKAHVVVFFIFLVSNAGGSLTPLGDPPLFLGFLKGVDFFWTVSHIFPETLFLAGSLLGIFYLLDRWYYSKEGVLPVDPT
PDTRRIGFDGARNFWLLAAVVALVLVSGFWKSAVVFNVLGTEVGLPGLLRDVGLVAVTLISLRLTPDSVHADNQFSWGPM
QEVAKLFAGIFLTIIPVIAMLRAGINGPFSAIISAVTRPDGQPDPAMYFWATGVLSSFLDNAPTYLVFFNTAGGDPQALM
TTLAPTLAAISAGAVFMGANSYIGNAPNLMVKAVAEDRGVRMPGFFGYMAWSGAVLIPLFVLITFIWF

Specific function: Unknown

COG id: COG1055

COG function: function code P; Na+/H+ antiporter NhaD and related arsenite permeases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50245; Mature: 50245

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLRWCAALALLCCLPGLALAAEIDGTRLHWIWAIPFVGILLSIAVMPLALPAFWHHHF
CHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKVSAAWALAFFLPFAAVFGPALAGSSFVHALLAEYVPFIVLLTALYTVSGGIFIRGNLH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
GSPGLNTAILAIGTVLASLMGTTGASMLMIRPLIRANDNRVHKAHVVVFFIFLVSNAGGS
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
LTPLGDPPLFLGFLKGVDFFWTVSHIFPETLFLAGSLLGIFYLLDRWYYSKEGVLPVDPT
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
PDTRRIGFDGARNFWLLAAVVALVLVSGFWKSAVVFNVLGTEVGLPGLLRDVGLVAVTLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SLRLTPDSVHADNQFSWGPMQEVAKLFAGIFLTIIPVIAMLRAGINGPFSAIISAVTRPD
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
GQPDPAMYFWATGVLSSFLDNAPTYLVFFNTAGGDPQALMTTLAPTLAAISAGAVFMGAN
CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCC
SYIGNAPNLMVKAVAEDRGVRMPGFFGYMAWSGAVLIPLFVLITFIWF
CCCCCCCCHHHEEHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MRVLRWCAALALLCCLPGLALAAEIDGTRLHWIWAIPFVGILLSIAVMPLALPAFWHHHF
CHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
GKVSAAWALAFFLPFAAVFGPALAGSSFVHALLAEYVPFIVLLTALYTVSGGIFIRGNLH
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
GSPGLNTAILAIGTVLASLMGTTGASMLMIRPLIRANDNRVHKAHVVVFFIFLVSNAGGS
CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
LTPLGDPPLFLGFLKGVDFFWTVSHIFPETLFLAGSLLGIFYLLDRWYYSKEGVLPVDPT
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC
PDTRRIGFDGARNFWLLAAVVALVLVSGFWKSAVVFNVLGTEVGLPGLLRDVGLVAVTLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
SLRLTPDSVHADNQFSWGPMQEVAKLFAGIFLTIIPVIAMLRAGINGPFSAIISAVTRPD
HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
GQPDPAMYFWATGVLSSFLDNAPTYLVFFNTAGGDPQALMTTLAPTLAAISAGAVFMGAN
CCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEECCC
SYIGNAPNLMVKAVAEDRGVRMPGFFGYMAWSGAVLIPLFVLITFIWF
CCCCCCCCHHHEEHHHCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA