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The map label for this gene is ydcR [H]

Identifier: 91788771

GI number: 91788771

Start: 3072663

End: 3074078

Strand: Reverse

Name: ydcR [H]

Synonym: Bpro_2911

Alternate gene names: 91788771

Gene position: 3074078-3072663 (Counterclockwise)

Preceding gene: 91788780

Following gene: 91788770

Centisome position: 59.11

GC content: 62.64

Gene sequence:

>1416_bases
ATGCTCACACTTCGCCCGGAACTCCAGACTCCACTGGTGAGCCAGATCGTCGACGGTCTGCGTGGAATGATTGCCGGGCA
AACCCTGAAACCTGGGGTCAAACTGCCCTCTATCCGCGGTTTCGCCGCCGCGCACGGGGTCAGCGTCTTCACGGTGGTGG
AGGCCTACGACCGCCTCGTCGCCCAGGGTTGGCTCGTTTCACGTGCCAACGCCGGTTTTTTCGTCAAACGCAGGGGCGAT
GATGGTGCATCGGGCGCTCCGTATGCGCAGCCCGAGCAGCCTAAATTTGATGCGCGCTGGTACCTCAAGCAGATTTTTGA
GAACCGTAATCTGCCGATGAAGCCAGGGTGCGGCTGGTTGCCGCACGACTTTCTCTTCGGTGACGCGCTGCGGCGCAGCA
TGCGGCACCTGTCGGCCGACGGGTCCTCGCTGGAGGGTTACGGCCTTCCCTACGGGCACATGGCCTTGCGCATGGTCATT
GCGGAGGCGCTGGCCGAAAACCAGATCGCGGTCGAAGTGGACCAGGTGCTGCTGACGCAGGGGTCCAGCCAGGCGCTTGA
CCTGGTGGCTCGCCAACTGGTCAAGCCGGGCGATACGGTGCTGGTGGACAGCCCCGGTTACCCCAACCTGATGTTCATGC
TGCGCTTTCTGGGCGCCAACCTGATAGGCGTGCCGCGTACCCCCACGGGTTACGATCTCGCCGCTCTTGAGTCCCTGCTG
GCCACCCACAAGCCGAGGGCTTTCTTCACGCAACCCCGCCTGCAGAGCCCGACCTGCTCAATTGCGTCGGCGGCCCATCT
GCACCGCCTGCTGCAACTGGCTGAAACCCACGGGTTCACTCTGGTGGAGAACGATATCTACGCCGATATGGACCCGATGC
CCCGGTCCACCCTGGCGAGCCTAGACCAGTTGCGGCGCGTGGTGTACATCGGCAGCTATTCAAAAACAATTTCGCCCAAC
CTGCGCGTAGGCTACCTGCTGGCCGGGCGCGACCTGATTGAGGATCTGGCCCAGCTCAAGATGATTTCGGGGCTCACATC
CTCGGACATCGCCGAGCGGCTCACTTTTGGGGTGGTCACCGATGGCCGCTGGCGCAAACACCTCAAGTCGCTTCGCGAGC
GCCTGGCCCTGGCGCACCGCAAGACAGAGAAAAGCCTGACCGGTCTTGGGTTTGAGCTCTTTCATGAGCCGGGGGCCGGC
ATGTACCTGTGGGCCCGGCACCCTGATCTCCCCGATAGCGCCGTGCTTTCCCAGGACGCGACGACCGAGGGCATCATGCT
CGGGCCGGGGCAACTGTTTTTGCTCGAACCCCATCCCACGGGCTGGCTTCGCTTTAACGTGGCTTTCAGCGACGATGAAC
GTTTATGGCGGTTTTTGTCCCGACGAATTGATCTGGGCCGGCAGACCGCCCAATAA

Upstream 100 bases:

>100_bases
GTGTTTTCAACACACTGTGCGGGTCTAGAATGCTGTACATGGATTCCCCAACCCGGTGCATGGGGCACGCAATGCACAAT
TTGGCTTTTTTGGTTTTTTG

Downstream 100 bases:

>100_bases
GTGGGGGCGTGCCCTCAAACCTATAATCGATGACTCAGCCGAAGCGGGTCAGCCCGAGGGCGCCTGCCTTGCCAAAACCA
ATTTCCCAGACCATGAGCCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MLTLRPELQTPLVSQIVDGLRGMIAGQTLKPGVKLPSIRGFAAAHGVSVFTVVEAYDRLVAQGWLVSRANAGFFVKRRGD
DGASGAPYAQPEQPKFDARWYLKQIFENRNLPMKPGCGWLPHDFLFGDALRRSMRHLSADGSSLEGYGLPYGHMALRMVI
AEALAENQIAVEVDQVLLTQGSSQALDLVARQLVKPGDTVLVDSPGYPNLMFMLRFLGANLIGVPRTPTGYDLAALESLL
ATHKPRAFFTQPRLQSPTCSIASAAHLHRLLQLAETHGFTLVENDIYADMDPMPRSTLASLDQLRRVVYIGSYSKTISPN
LRVGYLLAGRDLIEDLAQLKMISGLTSSDIAERLTFGVVTDGRWRKHLKSLRERLALAHRKTEKSLTGLGFELFHEPGAG
MYLWARHPDLPDSAVLSQDATTEGIMLGPGQLFLLEPHPTGWLRFNVAFSDDERLWRFLSRRIDLGRQTAQ

Sequences:

>Translated_471_residues
MLTLRPELQTPLVSQIVDGLRGMIAGQTLKPGVKLPSIRGFAAAHGVSVFTVVEAYDRLVAQGWLVSRANAGFFVKRRGD
DGASGAPYAQPEQPKFDARWYLKQIFENRNLPMKPGCGWLPHDFLFGDALRRSMRHLSADGSSLEGYGLPYGHMALRMVI
AEALAENQIAVEVDQVLLTQGSSQALDLVARQLVKPGDTVLVDSPGYPNLMFMLRFLGANLIGVPRTPTGYDLAALESLL
ATHKPRAFFTQPRLQSPTCSIASAAHLHRLLQLAETHGFTLVENDIYADMDPMPRSTLASLDQLRRVVYIGSYSKTISPN
LRVGYLLAGRDLIEDLAQLKMISGLTSSDIAERLTFGVVTDGRWRKHLKSLRERLALAHRKTEKSLTGLGFELFHEPGAG
MYLWARHPDLPDSAVLSQDATTEGIMLGPGQLFLLEPHPTGWLRFNVAFSDDERLWRFLSRRIDLGRQTAQ
>Mature_471_residues
MLTLRPELQTPLVSQIVDGLRGMIAGQTLKPGVKLPSIRGFAAAHGVSVFTVVEAYDRLVAQGWLVSRANAGFFVKRRGD
DGASGAPYAQPEQPKFDARWYLKQIFENRNLPMKPGCGWLPHDFLFGDALRRSMRHLSADGSSLEGYGLPYGHMALRMVI
AEALAENQIAVEVDQVLLTQGSSQALDLVARQLVKPGDTVLVDSPGYPNLMFMLRFLGANLIGVPRTPTGYDLAALESLL
ATHKPRAFFTQPRLQSPTCSIASAAHLHRLLQLAETHGFTLVENDIYADMDPMPRSTLASLDQLRRVVYIGSYSKTISPN
LRVGYLLAGRDLIEDLAQLKMISGLTSSDIAERLTFGVVTDGRWRKHLKSLRERLALAHRKTEKSLTGLGFELFHEPGAG
MYLWARHPDLPDSAVLSQDATTEGIMLGPGQLFLLEPHPTGWLRFNVAFSDDERLWRFLSRRIDLGRQTAQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=302, Percent_Identity=25.4966887417219, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI33469970, Length=302, Percent_Identity=25.4966887417219, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1787710, Length=451, Percent_Identity=27.2727272727273, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI1790797, Length=439, Percent_Identity=27.3348519362187, Blast_Score=139, Evalue=5e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52178; Mature: 52178

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLRPELQTPLVSQIVDGLRGMIAGQTLKPGVKLPSIRGFAAAHGVSVFTVVEAYDRLV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
AQGWLVSRANAGFFVKRRGDDGASGAPYAQPEQPKFDARWYLKQIFENRNLPMKPGCGWL
HHCHHEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
PHDFLFGDALRRSMRHLSADGSSLEGYGLPYGHMALRMVIAEALAENQIAVEVDQVLLTQ
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHC
GSSQALDLVARQLVKPGDTVLVDSPGYPNLMFMLRFLGANLIGVPRTPTGYDLAALESLL
CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHH
ATHKPRAFFTQPRLQSPTCSIASAAHLHRLLQLAETHGFTLVENDIYADMDPMPRSTLAS
HHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHH
LDQLRRVVYIGSYSKTISPNLRVGYLLAGRDLIEDLAQLKMISGLTSSDIAERLTFGVVT
HHHHHHEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEC
DGRWRKHLKSLRERLALAHRKTEKSLTGLGFELFHEPGAGMYLWARHPDLPDSAVLSQDA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCCCCCHHHHCCCC
TTEGIMLGPGQLFLLEPHPTGWLRFNVAFSDDERLWRFLSRRIDLGRQTAQ
CCCCEEECCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLTLRPELQTPLVSQIVDGLRGMIAGQTLKPGVKLPSIRGFAAAHGVSVFTVVEAYDRLV
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
AQGWLVSRANAGFFVKRRGDDGASGAPYAQPEQPKFDARWYLKQIFENRNLPMKPGCGWL
HHCHHEEECCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
PHDFLFGDALRRSMRHLSADGSSLEGYGLPYGHMALRMVIAEALAENQIAVEVDQVLLTQ
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEHHHHHHHC
GSSQALDLVARQLVKPGDTVLVDSPGYPNLMFMLRFLGANLIGVPRTPTGYDLAALESLL
CCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCHHHHHHHH
ATHKPRAFFTQPRLQSPTCSIASAAHLHRLLQLAETHGFTLVENDIYADMDPMPRSTLAS
HHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHH
LDQLRRVVYIGSYSKTISPNLRVGYLLAGRDLIEDLAQLKMISGLTSSDIAERLTFGVVT
HHHHHHEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCEEC
DGRWRKHLKSLRERLALAHRKTEKSLTGLGFELFHEPGAGMYLWARHPDLPDSAVLSQDA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCCCCCHHHHCCCC
TTEGIMLGPGQLFLLEPHPTGWLRFNVAFSDDERLWRFLSRRIDLGRQTAQ
CCCCEEECCCEEEEECCCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]