Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91788723
Identifier: 91788723
GI number: 91788723
Start: 3017644
End: 3018450
Strand: Reverse
Name: 91788723
Synonym: Bpro_2862
Alternate gene names: NA
Gene position: 3018450-3017644 (Counterclockwise)
Preceding gene: 91788724
Following gene: 91788722
Centisome position: 58.04
GC content: 64.06
Gene sequence:
>807_bases ATGGCCAGCCTGTCCGACCAGGAAATCCGGCACTATCGGGACCAGGGCTACGTCATTCCGCAGTTCCGGCTCAGCGATGC CTGGGTCCGCCGCATGCAGGATGCGCTGAACACCTTGATCCGCAACAACCCGGGCGTGCGCCCCGAAAAACTGGTGAGCG CCCATATCGAGGGCCACAACGATGAGGGCGTGCGGGGCAACCGGGATTTTTTCGATCTCGCCATGAACCCGGATATCGTT GACCTGGTCACGCAGGTGATCGGGCCCGACGTCATCCTGTGGGGCTGCCACGTATTCTGCAAGCCGGCCAGCGAAGGTTT TGAAACGCCCTGGCACCAGGACGGCCATTACTGGCCCATCCGCCCGCTGGCCAACTGCACCGTCTGGGTGGCGCTGGAGC CGAGCACGCGCGAGAATGGCTGCCTGCGCGTGATCCCCGGTTCGCACGCCGCCAAAGTGCTTCATCCTCACCTGCATGAA GACCGCACCGATCTGACGCTGAACCAGCGCATGGCCGAAGGCAGCTTTGACGTGAACGACGCGGTGGATCTGGAACTTGA GCCCGGCCAGATGTCTTTGCACGACATCTACATGATCCATGGCGCCCAGGCCAATACCTCCGGCATCCGGCGCACCGGCG TGGCGCTGCGCTATATGCCGGGCACTTCATTGTTCGACCGCAGCCTGCGCCCATCGGACGGCGAGACCGGCGTCCCGGTC AGCTTTGCTACGCGGCCTTTGTGGCTGCTCCGGGGCGAGGACCGGACAGGGCGCAATGATTTCTCGGTGGGCCACCGTGG CTCGTAG
Upstream 100 bases:
>100_bases GACCGCCGCTACGAACGGCTGCAGAGCTATGGCCGTTTCACCGACACCAAAGCCGACGCCGGCAAATAGGGCGCTACGGC AAGCCCAAGCGAACAAGCCC
Downstream 100 bases:
>100_bases CGCGACGGCGCAAGGCTTACCCGAAGCGCTGGCTTCTTTCTCTCCGGGCCTGCCTTTCGCTGTAGCGCTCAGCGGCGGCG CCGATTCAACCGCCTTGCTG
Product: phytanoyl-CoA dioxygenase
Products: NA
Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein; L-Proline 4-Hydroxylase; Non-Ribosomal Peptide Synthase Related Protein; Coronamic Acid Synthetase Chlorinating Component; SnoK-Like Protein; Phytanoyl-CoA Dioxygenase Superfamily Protein; Phytanoyl-CoA Dioxygenase PhyH Family
Number of amino acids: Translated: 268; Mature: 267
Protein sequence:
>268_residues MASLSDQEIRHYRDQGYVIPQFRLSDAWVRRMQDALNTLIRNNPGVRPEKLVSAHIEGHNDEGVRGNRDFFDLAMNPDIV DLVTQVIGPDVILWGCHVFCKPASEGFETPWHQDGHYWPIRPLANCTVWVALEPSTRENGCLRVIPGSHAAKVLHPHLHE DRTDLTLNQRMAEGSFDVNDAVDLELEPGQMSLHDIYMIHGAQANTSGIRRTGVALRYMPGTSLFDRSLRPSDGETGVPV SFATRPLWLLRGEDRTGRNDFSVGHRGS
Sequences:
>Translated_268_residues MASLSDQEIRHYRDQGYVIPQFRLSDAWVRRMQDALNTLIRNNPGVRPEKLVSAHIEGHNDEGVRGNRDFFDLAMNPDIV DLVTQVIGPDVILWGCHVFCKPASEGFETPWHQDGHYWPIRPLANCTVWVALEPSTRENGCLRVIPGSHAAKVLHPHLHE DRTDLTLNQRMAEGSFDVNDAVDLELEPGQMSLHDIYMIHGAQANTSGIRRTGVALRYMPGTSLFDRSLRPSDGETGVPV SFATRPLWLLRGEDRTGRNDFSVGHRGS >Mature_267_residues ASLSDQEIRHYRDQGYVIPQFRLSDAWVRRMQDALNTLIRNNPGVRPEKLVSAHIEGHNDEGVRGNRDFFDLAMNPDIVD LVTQVIGPDVILWGCHVFCKPASEGFETPWHQDGHYWPIRPLANCTVWVALEPSTRENGCLRVIPGSHAAKVLHPHLHED RTDLTLNQRMAEGSFDVNDAVDLELEPGQMSLHDIYMIHGAQANTSGIRRTGVALRYMPGTSLFDRSLRPSDGETGVPVS FATRPLWLLRGEDRTGRNDFSVGHRGS
Specific function: Unknown
COG id: COG5285
COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI5453884, Length=229, Percent_Identity=27.0742358078603, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI83281447, Length=153, Percent_Identity=32.0261437908497, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17544582, Length=236, Percent_Identity=29.2372881355932, Blast_Score=83, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30134; Mature: 30003
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLSDQEIRHYRDQGYVIPQFRLSDAWVRRMQDALNTLIRNNPGVRPEKLVSAHIEGHN CCCCCHHHHHHHHHCCEEECEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEECCCC DEGVRGNRDFFDLAMNPDIVDLVTQVIGPDVILWGCHVFCKPASEGFETPWHQDGHYWPI CCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECEEEECCCCCCCCCCCCCCCCEECC RPLANCTVWVALEPSTRENGCLRVIPGSHAAKVLHPHLHEDRTDLTLNQRMAEGSFDVND CCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCC AVDLELEPGQMSLHDIYMIHGAQANTSGIRRTGVALRYMPGTSLFDRSLRPSDGETGVPV EEEEEECCCCCCEEEEEEEECCCCCCCCCEECCEEEEECCCCHHHHCCCCCCCCCCCCCE SFATRPLWLLRGEDRTGRNDFSVGHRGS EECCCCEEEEECCCCCCCCCCCCCCCCC >Mature Secondary Structure ASLSDQEIRHYRDQGYVIPQFRLSDAWVRRMQDALNTLIRNNPGVRPEKLVSAHIEGHN CCCCHHHHHHHHHCCEEECEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEECCCC DEGVRGNRDFFDLAMNPDIVDLVTQVIGPDVILWGCHVFCKPASEGFETPWHQDGHYWPI CCCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECEEEECCCCCCCCCCCCCCCCEECC RPLANCTVWVALEPSTRENGCLRVIPGSHAAKVLHPHLHEDRTDLTLNQRMAEGSFDVND CCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCEEHHHHHCCCCCCCCC AVDLELEPGQMSLHDIYMIHGAQANTSGIRRTGVALRYMPGTSLFDRSLRPSDGETGVPV EEEEEECCCCCCEEEEEEEECCCCCCCCCEECCEEEEECCCCHHHHCCCCCCCCCCCCCE SFATRPLWLLRGEDRTGRNDFSVGHRGS EECCCCEEEEECCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA