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The map label for this gene is rbcR [H]

Identifier: 91788652

GI number: 91788652

Start: 2931186

End: 2932115

Strand: Reverse

Name: rbcR [H]

Synonym: Bpro_2790

Alternate gene names: 91788652

Gene position: 2932115-2931186 (Counterclockwise)

Preceding gene: 91788656

Following gene: 91788648

Centisome position: 56.38

GC content: 62.04

Gene sequence:

>930_bases
ATGAAAAACGCCACATTGCGTCAACTCAAGGTGTTCGAGTCGGTAGCGCGGAACCTGAGCTTTTCCCGGGCCGCCGAGGA
GCTGCACCTGACACAGCCAGCGGTGTCCATCCAGGTGAAGAAGCTGGAAGACCACGCAGGCCTTCCGCTGTTCGAGCAGC
TGGGCAAGAAAATTCACCTCACGCCCGCAGGGGTGGAGATGCTGCACTCCAGCCGGCTCATCATCCAGCAGTTCAAGGAA
GTCGAGGAAGCCATGACGCAATTCAAGGGCGTCTCTGGCGGCAAGCTGAACGTGGCCGTCATCAGCGCCGGCGACTATTT
CTTCCCGCGGTTGCTGGTGGAATTTGCGCGGCGCCACTCGGGTGTGACGCTGAACTTCGGTGTCTGCAACCGCGAAGAGC
TGCTGGACCAGCTGGCCAACAACGTCACCGACCTCGCCATCATGGTGCGCCCGCCGCTGGATATGGACACCGTGAGCGAG
CCGTTTGCGCCGCACCCCTACGTCATCGTGGCGCCGCCCGACCATCCGCTGGCCAGCAAAAAGCGCATCCCAGTGTCGCG
CCTGGCCCGCGAGCCCTTCGTGGTGCGCGAAAAAGGCTCTGACACCTGGAATTCCATGGAGGAGGGTTTCAGGGGGCACC
TGGCCGACCTCAATATCGCCATGGAGATCAAGAGTACCGAGACCATCAAGCAGGCGCTGATCGCCGGTATGGGCGTGAGC
TTTCTGTCAGCCCACACCGTGAGCCGGGAGCTGCAGGCGGGCAGCCTCGCGGTGCTGGACGTACAGGGCTTTCCGCTGAT
GCTTCACTGGTATGTGGTGCACCGCAAGCACAAGCGCCTGCCGCCCGTGGCACAGGCCTTCAAGAGCTTTTTGCTGAATG
ACGGCGCTGCCTGGATCGAACAGACGGTCGGCTTCAGTCTGAAGCGCTGA

Upstream 100 bases:

>100_bases
CGCAAATGTAGAAAAAAATAACGATTAGCGATAGTTAAAGTATTTAATAATATTGATAACTATTAAGTTATATATAAGCA
ACCAAGGCAGAAGGAGCCGC

Downstream 100 bases:

>100_bases
CGCTGCCTGGGCTTCTGCGTCAGCGCAGCAGGAAGTAGCCTGCCAGAACGTACAACACTCCTGCGAAGACCTTTTTCAGC
GGTTGTATGTCCATGCGGTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MKNATLRQLKVFESVARNLSFSRAAEELHLTQPAVSIQVKKLEDHAGLPLFEQLGKKIHLTPAGVEMLHSSRLIIQQFKE
VEEAMTQFKGVSGGKLNVAVISAGDYFFPRLLVEFARRHSGVTLNFGVCNREELLDQLANNVTDLAIMVRPPLDMDTVSE
PFAPHPYVIVAPPDHPLASKKRIPVSRLAREPFVVREKGSDTWNSMEEGFRGHLADLNIAMEIKSTETIKQALIAGMGVS
FLSAHTVSRELQAGSLAVLDVQGFPLMLHWYVVHRKHKRLPPVAQAFKSFLLNDGAAWIEQTVGFSLKR

Sequences:

>Translated_309_residues
MKNATLRQLKVFESVARNLSFSRAAEELHLTQPAVSIQVKKLEDHAGLPLFEQLGKKIHLTPAGVEMLHSSRLIIQQFKE
VEEAMTQFKGVSGGKLNVAVISAGDYFFPRLLVEFARRHSGVTLNFGVCNREELLDQLANNVTDLAIMVRPPLDMDTVSE
PFAPHPYVIVAPPDHPLASKKRIPVSRLAREPFVVREKGSDTWNSMEEGFRGHLADLNIAMEIKSTETIKQALIAGMGVS
FLSAHTVSRELQAGSLAVLDVQGFPLMLHWYVVHRKHKRLPPVAQAFKSFLLNDGAAWIEQTVGFSLKR
>Mature_309_residues
MKNATLRQLKVFESVARNLSFSRAAEELHLTQPAVSIQVKKLEDHAGLPLFEQLGKKIHLTPAGVEMLHSSRLIIQQFKE
VEEAMTQFKGVSGGKLNVAVISAGDYFFPRLLVEFARRHSGVTLNFGVCNREELLDQLANNVTDLAIMVRPPLDMDTVSE
PFAPHPYVIVAPPDHPLASKKRIPVSRLAREPFVVREKGSDTWNSMEEGFRGHLADLNIAMEIKSTETIKQALIAGMGVS
FLSAHTVSRELQAGSLAVLDVQGFPLMLHWYVVHRKHKRLPPVAQAFKSFLLNDGAAWIEQTVGFSLKR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=287, Percent_Identity=28.5714285714286, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI157672245, Length=190, Percent_Identity=30.5263157894737, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1790399, Length=248, Percent_Identity=26.2096774193548, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=26.4406779661017, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787530, Length=247, Percent_Identity=28.3400809716599, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788748, Length=298, Percent_Identity=26.1744966442953, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693105, Length=290, Percent_Identity=24.1379310344828, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=26.6211604095563, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082132, Length=282, Percent_Identity=24.468085106383, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789173, Length=306, Percent_Identity=28.4313725490196, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788887, Length=192, Percent_Identity=29.6875, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=25.4032258064516, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788296, Length=245, Percent_Identity=23.6734693877551, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787949, Length=279, Percent_Identity=26.8817204301075, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787601, Length=181, Percent_Identity=24.3093922651934, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI2367136, Length=248, Percent_Identity=22.5806451612903, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=198, Percent_Identity=26.2626262626263, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34431; Mature: 34431

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNATLRQLKVFESVARNLSFSRAAEELHLTQPAVSIQVKKLEDHAGLPLFEQLGKKIHL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEHHCCCCCCHHHHCCCEEEC
TPAGVEMLHSSRLIIQQFKEVEEAMTQFKGVSGGKLNVAVISAGDYFFPRLLVEFARRHS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
GVTLNFGVCNREELLDQLANNVTDLAIMVRPPLDMDTVSEPFAPHPYVIVAPPDHPLASK
CCEEEECCCCHHHHHHHHHCCHHEEEEEEECCCCHHHCCCCCCCCCEEEECCCCCCCCCC
KRIPVSRLAREPFVVREKGSDTWNSMEEGFRGHLADLNIAMEIKSTETIKQALIAGMGVS
CCCCHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVSRELQAGSLAVLDVQGFPLMLHWYVVHRKHKRLPPVAQAFKSFLLNDGAAWIE
HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
QTVGFSLKR
HHHCCCCCC
>Mature Secondary Structure
MKNATLRQLKVFESVARNLSFSRAAEELHLTQPAVSIQVKKLEDHAGLPLFEQLGKKIHL
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEEHHCCCCCCHHHHCCCEEEC
TPAGVEMLHSSRLIIQQFKEVEEAMTQFKGVSGGKLNVAVISAGDYFFPRLLVEFARRHS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCC
GVTLNFGVCNREELLDQLANNVTDLAIMVRPPLDMDTVSEPFAPHPYVIVAPPDHPLASK
CCEEEECCCCHHHHHHHHHCCHHEEEEEEECCCCHHHCCCCCCCCCEEEECCCCCCCCCC
KRIPVSRLAREPFVVREKGSDTWNSMEEGFRGHLADLNIAMEIKSTETIKQALIAGMGVS
CCCCHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHCCHH
FLSAHTVSRELQAGSLAVLDVQGFPLMLHWYVVHRKHKRLPPVAQAFKSFLLNDGAAWIE
HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHH
QTVGFSLKR
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]