Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

Click here to switch to the map view.

The map label for this gene is nadE [H]

Identifier: 91788178

GI number: 91788178

Start: 2404099

End: 2405787

Strand: Direct

Name: nadE [H]

Synonym: Bpro_2309

Alternate gene names: 91788178

Gene position: 2404099-2405787 (Clockwise)

Preceding gene: 91788175

Following gene: 91788179

Centisome position: 46.23

GC content: 60.98

Gene sequence:

>1689_bases
ATGACTCTCAAAATCTGCGTTGCCCAATTGAACTACTGCGTGGGTGACATGCCGGGCAATGCGCAAAAAATCATTGACGC
GGCCCGCACGGCCTATGCCGGTGGTGTCCGCCTGCTGCTCACGCCCGAGCTGGCGATCTGCGGCTACGCGGCTGAAGACC
TGTTTTTGCGCCCATCCTTTATCCAAGCCTGTGATGATGCCGTGAATCTGGTGGCACGTGAGCTAGCCGGGTTAAAAGGC
CTGACGGTGGTGGTGGGCACACCCACCGGTGGTGACAATGGCAAAGGCCTGCGCACCAAGAGCGTGGAGGTGCAGCAGCG
CCACAATGCCGCCCGGGTACTGCGCGAGGGCCGGGTGCTCCAGACCTACGCAAAGCGCGAGCTACCCAATTACCAAGTGT
TTGATGAGCGCCGCTACTTTACGCCGGGGCAGGGCGTGTGCGTGTTTCAGGCGGGGGACGGGGCAGACGCCATCAGCGTC
GGCCTGCTGATCTGTGAAGACGCCTGGTTTGAAGAGCCGGCGCGGCTGGCCCAGGCGGCTGGCGCCGAGGTCTTGGCTGT
CATCAATGCCTCGCCGTTTCACGTGGGCAAGGGCGGCGAGCGCGAGGTGATGATGCGCAGCCGGGTGCTGGCTACTGGCC
TGCCATTGGTTTATGCGCATCTGGTGGGTGGCCAGGACGAGATTGTGTTTGAAGGCCATTCGTTTGCGCTGCAGGCCGAT
GGGGCGCTGGCCGGTCGGGCTGAAAGCTTCAAGGAAAATCTATTCTTGACCGAGGTGGAGCGTACATCAACAGCGATTAA
GTTGATAGCAAATATCGAGCCCGGGCGGAGCCATGAGGCTGACTTGTGGGATGCCCTTGTCCTTGGTGTCAGGGATTACC
TGGGAAAAAATGGCTTTCCGGGCGCGATTCTTGGCCTTTCCGGCGGCATCGACTCAGCGCTGGTGCTGGCGATTGCCGTG
GACGCGCTGGGCGCCGACAAGGTGCGTACCGTCATGATGCCGTCCCCCTACACGGCTGACATTTCATGGGTGGATGCGCG
CGAGATGGCGCAGCGCCTGAAGGTGCGCTATGACGAGATTTCCATCGTTCCCGAGTTTGAAGCTTTCAAGGCTTCGCTCG
CCCATGAGTTCAAGGGGCTGAAGGAAGACACGACCGAAGAAAACATCCAGGCGCGCATTCGCGGGGTATTTTTGATGGCG
CTGAGCAACAAGTTTGGCTCCATCGTGCTCACCACCGGCAACAAGAGCGAAATGGCCACCGGCTACTGCACGCTGTATGG
CGACATGGCGGGCGGTTTCGCGGTGATCAAGGATCTGGCCAAGACGACGGTGTTCAAGCTGGCGCGCTGGCGCAACGAAA
ATGACCCGTATGGCACGGGCGCCAATCCGATTCCCGAGCGCGTCATCACGCGGCCGCCGAGCGCCGAACTGCGCCCCGAC
CAGACCGACCAGGACAGCCTGCCGCCCTACGAGGTGCTGGACGCGATTCTGGAGCGCTACATGGAAAACGACCAGAGCGT
CGAAGCCATCATTGCAGCCGGCTTTGAGCGTGCGGTGGTTGAGTGCGTGGCCCGGCTCATCAAGATCAACGAGTACAAGC
GCCGCCAGGCTCCGGTAGGAATCCGGGTCACACACCGGAGCTTTGGCAAGGATTGGCGCTATCCTATTACCAGCAAATTT
CGCGCCTAG

Upstream 100 bases:

>100_bases
TGGTTCAGCCGACCCTGAGTTTGTCGCAGGGGCCAGGGGTTGTGTGCATTGATTGACCAAGGCTTCGACAGACTCAGCCC
GAACGGAATTTGTTGTTTTC

Downstream 100 bases:

>100_bases
GGCGGGCCTTGGTGGCCTGCATTGGCGCTACATTCAAGGCAGTAGCCAATATTCAGAATTCAGAACCAACGGAGATCTTT
CAGTGAAACAAATTACCGCG

Product: NAD+ synthetase

Products: NA

Alternate protein names: NAD(+) synthase [glutamine-hydrolysing] [H]

Number of amino acids: Translated: 562; Mature: 561

Protein sequence:

>562_residues
MTLKICVAQLNYCVGDMPGNAQKIIDAARTAYAGGVRLLLTPELAICGYAAEDLFLRPSFIQACDDAVNLVARELAGLKG
LTVVVGTPTGGDNGKGLRTKSVEVQQRHNAARVLREGRVLQTYAKRELPNYQVFDERRYFTPGQGVCVFQAGDGADAISV
GLLICEDAWFEEPARLAQAAGAEVLAVINASPFHVGKGGEREVMMRSRVLATGLPLVYAHLVGGQDEIVFEGHSFALQAD
GALAGRAESFKENLFLTEVERTSTAIKLIANIEPGRSHEADLWDALVLGVRDYLGKNGFPGAILGLSGGIDSALVLAIAV
DALGADKVRTVMMPSPYTADISWVDAREMAQRLKVRYDEISIVPEFEAFKASLAHEFKGLKEDTTEENIQARIRGVFLMA
LSNKFGSIVLTTGNKSEMATGYCTLYGDMAGGFAVIKDLAKTTVFKLARWRNENDPYGTGANPIPERVITRPPSAELRPD
QTDQDSLPPYEVLDAILERYMENDQSVEAIIAAGFERAVVECVARLIKINEYKRRQAPVGIRVTHRSFGKDWRYPITSKF
RA

Sequences:

>Translated_562_residues
MTLKICVAQLNYCVGDMPGNAQKIIDAARTAYAGGVRLLLTPELAICGYAAEDLFLRPSFIQACDDAVNLVARELAGLKG
LTVVVGTPTGGDNGKGLRTKSVEVQQRHNAARVLREGRVLQTYAKRELPNYQVFDERRYFTPGQGVCVFQAGDGADAISV
GLLICEDAWFEEPARLAQAAGAEVLAVINASPFHVGKGGEREVMMRSRVLATGLPLVYAHLVGGQDEIVFEGHSFALQAD
GALAGRAESFKENLFLTEVERTSTAIKLIANIEPGRSHEADLWDALVLGVRDYLGKNGFPGAILGLSGGIDSALVLAIAV
DALGADKVRTVMMPSPYTADISWVDAREMAQRLKVRYDEISIVPEFEAFKASLAHEFKGLKEDTTEENIQARIRGVFLMA
LSNKFGSIVLTTGNKSEMATGYCTLYGDMAGGFAVIKDLAKTTVFKLARWRNENDPYGTGANPIPERVITRPPSAELRPD
QTDQDSLPPYEVLDAILERYMENDQSVEAIIAAGFERAVVECVARLIKINEYKRRQAPVGIRVTHRSFGKDWRYPITSKF
RA
>Mature_561_residues
TLKICVAQLNYCVGDMPGNAQKIIDAARTAYAGGVRLLLTPELAICGYAAEDLFLRPSFIQACDDAVNLVARELAGLKGL
TVVVGTPTGGDNGKGLRTKSVEVQQRHNAARVLREGRVLQTYAKRELPNYQVFDERRYFTPGQGVCVFQAGDGADAISVG
LLICEDAWFEEPARLAQAAGAEVLAVINASPFHVGKGGEREVMMRSRVLATGLPLVYAHLVGGQDEIVFEGHSFALQADG
ALAGRAESFKENLFLTEVERTSTAIKLIANIEPGRSHEADLWDALVLGVRDYLGKNGFPGAILGLSGGIDSALVLAIAVD
ALGADKVRTVMMPSPYTADISWVDAREMAQRLKVRYDEISIVPEFEAFKASLAHEFKGLKEDTTEENIQARIRGVFLMAL
SNKFGSIVLTTGNKSEMATGYCTLYGDMAGGFAVIKDLAKTTVFKLARWRNENDPYGTGANPIPERVITRPPSAELRPDQ
TDQDSLPPYEVLDAILERYMENDQSVEAIIAAGFERAVVECVARLIKINEYKRRQAPVGIRVTHRSFGKDWRYPITSKFR
A

Specific function: Can use both glutamine or ammonia as a nitrogen source [H]

COG id: COG0171

COG function: function code H; NAD synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CN hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014445
- InterPro:   IPR022310
- InterPro:   IPR003694
- InterPro:   IPR000132
- InterPro:   IPR003010
- InterPro:   IPR014729 [H]

Pfam domain/function: PF00795 CN_hydrolase; PF02540 NAD_synthase [H]

EC number: =6.3.5.1 [H]

Molecular weight: Translated: 61338; Mature: 61207

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50263 CN_HYDROLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKICVAQLNYCVGDMPGNAQKIIDAARTAYAGGVRLLLTPELAICGYAAEDLFLRPSF
CCCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHEECCCHHHHEECHHH
IQACDDAVNLVARELAGLKGLTVVVGTPTGGDNGKGLRTKSVEVQQRHNAARVLREGRVL
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHHCCHHH
QTYAKRELPNYQVFDERRYFTPGQGVCVFQAGDGADAISVGLLICEDAWFEEPARLAQAA
HHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHHEEEEEECCCCCCCHHHHHHHC
GAEVLAVINASPFHVGKGGEREVMMRSRVLATGLPLVYAHLVGGQDEIVFEGHSFALQAD
CCEEEEEECCCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCEEEEEEC
GALAGRAESFKENLFLTEVERTSTAIKLIANIEPGRSHEADLWDALVLGVRDYLGKNGFP
CCCCCCHHHHHHCCEEEEHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
GAILGLSGGIDSALVLAIAVDALGADKVRTVMMPSPYTADISWVDAREMAQRLKVRYDEI
CEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHE
SIVPEFEAFKASLAHEFKGLKEDTTEENIQARIRGVFLMALSNKFGSIVLTTGNKSEMAT
EECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCE
GYCTLYGDMAGGFAVIKDLAKTTVFKLARWRNENDPYGTGANPIPERVITRPPSAELRPD
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
QTDQDSLPPYEVLDAILERYMENDQSVEAIIAAGFERAVVECVARLIKINEYKRRQAPVG
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IRVTHRSFGKDWRYPITSKFRA
EEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLKICVAQLNYCVGDMPGNAQKIIDAARTAYAGGVRLLLTPELAICGYAAEDLFLRPSF
CCEEEEHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHEECCCHHHHEECHHH
IQACDDAVNLVARELAGLKGLTVVVGTPTGGDNGKGLRTKSVEVQQRHNAARVLREGRVL
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHHCCHHH
QTYAKRELPNYQVFDERRYFTPGQGVCVFQAGDGADAISVGLLICEDAWFEEPARLAQAA
HHHHHHCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHHEEEEEECCCCCCCHHHHHHHC
GAEVLAVINASPFHVGKGGEREVMMRSRVLATGLPLVYAHLVGGQDEIVFEGHSFALQAD
CCEEEEEECCCCEECCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCEEEEEEC
GALAGRAESFKENLFLTEVERTSTAIKLIANIEPGRSHEADLWDALVLGVRDYLGKNGFP
CCCCCCHHHHHHCCEEEEHHHHHEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
GAILGLSGGIDSALVLAIAVDALGADKVRTVMMPSPYTADISWVDAREMAQRLKVRYDEI
CEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHE
SIVPEFEAFKASLAHEFKGLKEDTTEENIQARIRGVFLMALSNKFGSIVLTTGNKSEMAT
EECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHEEEEEECCCCCEEEEEECCCCCCCE
GYCTLYGDMAGGFAVIKDLAKTTVFKLARWRNENDPYGTGANPIPERVITRPPSAELRPD
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
QTDQDSLPPYEVLDAILERYMENDQSVEAIIAAGFERAVVECVARLIKINEYKRRQAPVG
CCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IRVTHRSFGKDWRYPITSKFRA
EEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]