Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91788135
Identifier: 91788135
GI number: 91788135
Start: 2351752
End: 2354322
Strand: Direct
Name: 91788135
Synonym: Bpro_2264
Alternate gene names: NA
Gene position: 2351752-2354322 (Clockwise)
Preceding gene: 91788129
Following gene: 91788136
Centisome position: 45.22
GC content: 67.79
Gene sequence:
>2571_bases ATGCCGCCAGAGACCCTTGAGATCCCTGAGAACGCTGTACTGTCCCCGGATGTGCTGTGCTGGCAGCGCGTCATGGCGCA GCTGGCCGCGACGCTCAAGACGCGAAATGTGCACCCCGCCGAGGCCGTTGTCCTGCTTCCGTATGCGCAGTTGATCCAGC AGGCGCGCCGGGCCTGGGCCGGGGTTGCGGGCGAAACATTTTTTGTACCGCGATTTGAGACCACCATGAACTGGGCCAGC AGCCTGGGCGGCACGCTGGGGCTTTTCACGCCATCGGGTGATGATTTGCGCATGGACATGGCGGTCGACATGCTGACCGC CGCATCGCTGCTGGAACGGGCCGGCCTGGGCGCGCAGCAGGATGCCCTGGCCGGGCGCCTTGTCGAGGCGGCGTGGAGTC TGGGGCGTGTCGCGGCGGCGGTGCTGCCGGCTCAGCGCCAGGTCTGGAGCGAGCGCCTGGCGGTGTCGCTGCAGGCGGGC CTGGATTCTCCGGTGCTGGCTCTGGAAGCCGCAGTGGGTCAGATCGCGCTGGCCTGGGCCGCGGCTTCGGCCTATCCGTC AGATCGCCTGTTCCAGGCCACACCGGCGTTGCTGGCCGTGCTGGAAGGGTTTCAGGCTGAACCGCTGACCGATGCACTGA AGGCGCACTTCGGCGAGCGTTCCATCTCCATTGCGCTGTGCCTGCCGCAGGACCTGCGGGCTCCCGCGGAATTGCCCCTG CCGTCGCTGCACGCCGCGATGGACGCCGAGGATGAGGCCGGCCGTGCCGCCGCCTGTGTGCTGGCGCACTTGGCCCAGGG GCGCAGCCCGGTCGCGCTGATCGCCCAGGACCGGCTCCTGACACGCCGGGTGGGCGCCATGCTGGCCGGGCGCGGCATTG CGATGCGCGACGAAACAGGCTGGAAGCTGTCCACCACGCGTGCTGCGGCCAGCCTGATGGGCCTGCTGCGCGCCATGCCG TGGGACGCCTCCACCGACGCCGTACTGGACTGGCTGAAGAATGCACCCGGCGTCAGTCCGGGCGAGGTCACCGCAGCGGA AACCGAACTGCGCAAGGCTGGCCTGCGCGCCTGGCGCGATCTGCCGGCGACCCCGCAGCCGGCCTTCGCTGCGACCCAGC AACTCGCCTTGCAGGTCGACGCATTGCGCAAGGCCCTCGGGCGCACACGCCCACTGGCCTCGTGGCTGCGCGACCTGCGT GCTGCCTTGCAGTCGGCAGGGCAGTGGGACGCGCTGGAAATCGACAATGCCGGCCAGACGGTGCTGGAGGTGCTTCGCCT GCATGAGGGCGCCGAGGCGGAGTTCGACAGCGCACCCACGATGGCGCTGGCCTCGTTCACCAGTTGGGTGAACCAGGCCC TGGAAGGCGGCAAGTTTTCTCCCGAGCACCCGCAGGGGGAGCAGGTGGTGATCCTGCCGCTGGCACAACTCCTGGGGCGG CCCATGCAGGCGGTGGTGTTGCCCGGCTGCGATGAAATCCGCCTGCCGGTTTCGCCCGAGCCTGCGGGTCTCTGGACGCC CGGACAACGCGAAGTTCTGGGCCTGCCCTCGCGTGACATGCTGGCCAGCGCCAACCGGGCTGCCTGGCACTATGTCCTGC AACTGCCGCATGTGGACCTGCTTTGGCGCACCAGCGAGGCCGGTGAGCACCTGATTCCCAGCGGTTTTGTGCAGGAGCTG CTGCTCGCGCAAGCCGGGCACGGCGACAGTCCAGCCTTGGCGACTGACTCCCGCCGCTTGCGCCCGGTCGCGATCCAGCC CACGCCGCGTCCCATGCCCACCGGCGAGGCCTTGCCGGTGACCCGGCTGTCGGCCAGCGCCTATGAAGACCTGCGCCGCT GTCCCTACCGTTTTTTTGCACTGCGCCAGTTGCGCCTGCAGGAGTCCGGCGAGCTGGACAGCGAACTGGACAAACGCGAC TTCGGCAATTGGCTGCACAGCGTTCTGCGCTATTTCCATGAGGCACTGAAAGCCGCGCCAACCCCCGAATTGTCTGCGCG TGAAGCCATGATTAACCTGGCGGCTGAACGGGTCACGCAGGCGATGGCCCTGAGCGACAGCGAGTTCCTGCCGTTTGCCG CGATCTGGCCGCGTGTGCGCGAGGGCTACCTGGCCTGGCTCACCGATCACGAGGCGGAGGGCGCCCGTTTTGAGGAGGCG GAAGCCGAGCGTGAAATGCCCCTGGGCAAGCTGCAGTTGATCGGCAAACTGGACCGCATCGACCGCCAGGCCGATGGCCA TACGCTGCTGATTGACTACAAAACCGAGCCACGCACAGTGACGGTCGAGCGTATCAAGGACGGGCAGGAAGACACCCAAC TGGCGTTCTATGCCGCGCTGATGCACGACGACACGCTGGCGGCGGCCTACGTCAACCTTGGCGAAAAAGAAGCCACCCGC ACCTACGCGCAGCCCGGGATCGTGGGCCTGCGTGACGCGCTGATCGAAAGCATCCTGACCGACATGGACCGCATTGCGCG CGGCACGCCGCTGCCCGCGCTGGGCGAGGGCAAGGCCTGCGAATACTGTGCGGCGCGCGGCTTGTGCCGCAAGGATTTCT GGAATGAGTAG
Upstream 100 bases:
>100_bases GCTCATGCAGCCGCTATGGGCCCGATAGCCGTCTTCTGAAACACGCCCCGCGTCCCGCTTGCCATCCGTTTTTCCTGTTT CCGAGTTCCCTCATCAATCC
Downstream 100 bases:
>100_bases AGCCCCCACGCTTCTCGCTTCGCGTACTACGCTTCCCCCCGGGGGGGCCGCTGCGCCTGCGGCCCGGCGAAGCCGGTTCC GCGGCCCCTGCTGGTATGAA
Product: exonuclease-like protein
Products: NA
Alternate protein names: Exonuclease-Like Protein; Helicase C_term RecB Family Exonuclease; Exonuclease-Like; Helicase C_term Recb Family Exonuclease; Inactivated Superfamily I Helicase; Inactivated Superfamily I Helicase-Like Protein
Number of amino acids: Translated: 856; Mature: 855
Protein sequence:
>856_residues MPPETLEIPENAVLSPDVLCWQRVMAQLAATLKTRNVHPAEAVVLLPYAQLIQQARRAWAGVAGETFFVPRFETTMNWAS SLGGTLGLFTPSGDDLRMDMAVDMLTAASLLERAGLGAQQDALAGRLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAG LDSPVLALEAAVGQIALAWAAASAYPSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPL PSLHAAMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETGWKLSTTRAAASLMGLLRAMP WDASTDAVLDWLKNAPGVSPGEVTAAETELRKAGLRAWRDLPATPQPAFAATQQLALQVDALRKALGRTRPLASWLRDLR AALQSAGQWDALEIDNAGQTVLEVLRLHEGAEAEFDSAPTMALASFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGR PMQAVVLPGCDEIRLPVSPEPAGLWTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDLLWRTSEAGEHLIPSGFVQEL LLAQAGHGDSPALATDSRRLRPVAIQPTPRPMPTGEALPVTRLSASAYEDLRRCPYRFFALRQLRLQESGELDSELDKRD FGNWLHSVLRYFHEALKAAPTPELSAREAMINLAAERVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEEA EAEREMPLGKLQLIGKLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAALMHDDTLAAAYVNLGEKEATR TYAQPGIVGLRDALIESILTDMDRIARGTPLPALGEGKACEYCAARGLCRKDFWNE
Sequences:
>Translated_856_residues MPPETLEIPENAVLSPDVLCWQRVMAQLAATLKTRNVHPAEAVVLLPYAQLIQQARRAWAGVAGETFFVPRFETTMNWAS SLGGTLGLFTPSGDDLRMDMAVDMLTAASLLERAGLGAQQDALAGRLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAG LDSPVLALEAAVGQIALAWAAASAYPSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPL PSLHAAMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETGWKLSTTRAAASLMGLLRAMP WDASTDAVLDWLKNAPGVSPGEVTAAETELRKAGLRAWRDLPATPQPAFAATQQLALQVDALRKALGRTRPLASWLRDLR AALQSAGQWDALEIDNAGQTVLEVLRLHEGAEAEFDSAPTMALASFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGR PMQAVVLPGCDEIRLPVSPEPAGLWTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDLLWRTSEAGEHLIPSGFVQEL LLAQAGHGDSPALATDSRRLRPVAIQPTPRPMPTGEALPVTRLSASAYEDLRRCPYRFFALRQLRLQESGELDSELDKRD FGNWLHSVLRYFHEALKAAPTPELSAREAMINLAAERVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEEA EAEREMPLGKLQLIGKLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAALMHDDTLAAAYVNLGEKEATR TYAQPGIVGLRDALIESILTDMDRIARGTPLPALGEGKACEYCAARGLCRKDFWNE >Mature_855_residues PPETLEIPENAVLSPDVLCWQRVMAQLAATLKTRNVHPAEAVVLLPYAQLIQQARRAWAGVAGETFFVPRFETTMNWASS LGGTLGLFTPSGDDLRMDMAVDMLTAASLLERAGLGAQQDALAGRLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAGL DSPVLALEAAVGQIALAWAAASAYPSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPLP SLHAAMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETGWKLSTTRAAASLMGLLRAMPW DASTDAVLDWLKNAPGVSPGEVTAAETELRKAGLRAWRDLPATPQPAFAATQQLALQVDALRKALGRTRPLASWLRDLRA ALQSAGQWDALEIDNAGQTVLEVLRLHEGAEAEFDSAPTMALASFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGRP MQAVVLPGCDEIRLPVSPEPAGLWTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDLLWRTSEAGEHLIPSGFVQELL LAQAGHGDSPALATDSRRLRPVAIQPTPRPMPTGEALPVTRLSASAYEDLRRCPYRFFALRQLRLQESGELDSELDKRDF GNWLHSVLRYFHEALKAAPTPELSAREAMINLAAERVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEEAE AEREMPLGKLQLIGKLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAALMHDDTLAAAYVNLGEKEATRT YAQPGIVGLRDALIESILTDMDRIARGTPLPALGEGKACEYCAARGLCRKDFWNE
Specific function: Unknown
COG id: COG2887
COG function: function code L; RecB family exonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 93057; Mature: 92926
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPETLEIPENAVLSPDVLCWQRVMAQLAATLKTRNVHPAEAVVLLPYAQLIQQARRAWA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHEEEHHHHHHHHHHHHHHH GVAGETFFVPRFETTMNWASSLGGTLGLFTPSGDDLRMDMAVDMLTAASLLERAGLGAQQ CCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCH DALAGRLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAGLDSPVLALEAAVGQIALAWA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AASAYPSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPL HHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCC PSLHAAMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETG CHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEECCCC WKLSTTRAAASLMGLLRAMPWDASTDAVLDWLKNAPGVSPGEVTAAETELRKAGLRAWRD CEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC LPATPQPAFAATQQLALQVDALRKALGRTRPLASWLRDLRAALQSAGQWDALEIDNAGQT CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHH VLEVLRLHEGAEAEFDSAPTMALASFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGR HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHCC PMQAVVLPGCDEIRLPVSPEPAGLWTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDL CCEEEECCCCCCEECCCCCCCCCCCCCCCCCEECCCCHHHHHCCCHHHEEEEEECCCEEE LWRTSEAGEHLIPSGFVQELLLAQAGHGDSPALATDSRRLRPVAIQPTPRPMPTGEALPV EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCH TRLSASAYEDLRRCPYRFFALRQLRLQESGELDSELDKRDFGNWLHSVLRYFHEALKAAP HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC TPELSAREAMINLAAERVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEEA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHHH EAEREMPLGKLQLIGKLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAAL HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHHCCCCHHHHHHHHHH MHDDTLAAAYVNLGEKEATRTYAQPGIVGLRDALIESILTDMDRIARGTPLPALGEGKAC HHCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH EYCAARGLCRKDFWNE HHHHHCCCHHHHCCCC >Mature Secondary Structure PPETLEIPENAVLSPDVLCWQRVMAQLAATLKTRNVHPAEAVVLLPYAQLIQQARRAWA CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHEEEHHHHHHHHHHHHHHH GVAGETFFVPRFETTMNWASSLGGTLGLFTPSGDDLRMDMAVDMLTAASLLERAGLGAQQ CCCCCEEEECCHHHHHHHHHHCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCCCCH DALAGRLVEAAWSLGRVAAAVLPAQRQVWSERLAVSLQAGLDSPVLALEAAVGQIALAWA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH AASAYPSDRLFQATPALLAVLEGFQAEPLTDALKAHFGERSISIALCLPQDLRAPAELPL HHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEECCHHHCCCCCCCC PSLHAAMDAEDEAGRAAACVLAHLAQGRSPVALIAQDRLLTRRVGAMLAGRGIAMRDETG CHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEECCCC WKLSTTRAAASLMGLLRAMPWDASTDAVLDWLKNAPGVSPGEVTAAETELRKAGLRAWRD CEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC LPATPQPAFAATQQLALQVDALRKALGRTRPLASWLRDLRAALQSAGQWDALEIDNAGQT CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCHH VLEVLRLHEGAEAEFDSAPTMALASFTSWVNQALEGGKFSPEHPQGEQVVILPLAQLLGR HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHHCC PMQAVVLPGCDEIRLPVSPEPAGLWTPGQREVLGLPSRDMLASANRAAWHYVLQLPHVDL CCEEEECCCCCCEECCCCCCCCCCCCCCCCCEECCCCHHHHHCCCHHHEEEEEECCCEEE LWRTSEAGEHLIPSGFVQELLLAQAGHGDSPALATDSRRLRPVAIQPTPRPMPTGEALPV EEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCH TRLSASAYEDLRRCPYRFFALRQLRLQESGELDSELDKRDFGNWLHSVLRYFHEALKAAP HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC TPELSAREAMINLAAERVTQAMALSDSEFLPFAAIWPRVREGYLAWLTDHEAEGARFEEA CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCHHH EAEREMPLGKLQLIGKLDRIDRQADGHTLLIDYKTEPRTVTVERIKDGQEDTQLAFYAAL HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHHCCCCHHHHHHHHHH MHDDTLAAAYVNLGEKEATRTYAQPGIVGLRDALIESILTDMDRIARGTPLPALGEGKAC HHCCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH EYCAARGLCRKDFWNE HHHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA