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The map label for this gene is rimM [H]

Identifier: 91787573

GI number: 91787573

Start: 1741839

End: 1742480

Strand: Direct

Name: rimM [H]

Synonym: Bpro_1691

Alternate gene names: 91787573

Gene position: 1741839-1742480 (Clockwise)

Preceding gene: 91787572

Following gene: 91787574

Centisome position: 33.5

GC content: 61.68

Gene sequence:

>642_bases
TTGAGGGGCAGCGCAGCACACGAAGTGGCAAGCGTGGGGGCTAACAGTTCTTCGCCTGCGGGCTTGACACCGTCAAGCCT
TCCGGACGACGCCATTGAGGTTGGGCGCATCCTGGATGCCTGGGGTGTCAAGGGCTGGGTGAAAATCCTGCCGCACAGCA
CCGATCCGGAGGCCCTTTTCTCGGCCAAATCCTGGTTTCTCCAGGCTCCGGAAGCCAAATTCCGCCCGGGTTTCAACGCG
TTCTCCGGAACCGTTTTGCTCAGCGTGGACGAGGCCAAAACCCACTCCGACACTGTCGTCGCCAAATTCAGCGGCCAGGA
CGATCGCAATGCCGCAGAGGCCTTGCGGGGCGCCCGCATTTTTCTGCCGCGCAGCAGTTTCCCGGTTGCCTCCAAGGACG
AGTATTACTGGGTCGACCTGATAGGCCTGAATGTCGTCAACCGCGAGGGCGTGCCCCTGGGGCAGGTGCGCGACCTGATG
ACGACCGGTCCCCATTCGGTGCTGTGCGTGGAGTACACGGCGCAGCAGGAAGACGGCACGGCTGTAACCGCCGAACGCAT
GATTCCCTTTGTCTCCGCCTATATCGACACGGTCGATATCGCGGGCAAATGCATCACGGTCGACTGGCAGCCCGACTATT
GA

Upstream 100 bases:

>100_bases
CGCCAAGGCTGCCTGATTTTCAGCATTTTTCTGCAAAGATAAATGTTGGGGGTGAACAGGACAATTTCCCGCCGGGCCGC
CCCAAGGGAAATTCGCCCCC

Downstream 100 bases:

>100_bases
CGCCGGTGCAGGCTCTCGGGGGTGGATTGCCCTGAGCCGGCCGGTGCGCGCAAAATAGCCTTTCCATGCGTTTTGACGTC
ATCACCCTTTTCCCTGAGCT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MRGSAAHEVASVGANSSSPAGLTPSSLPDDAIEVGRILDAWGVKGWVKILPHSTDPEALFSAKSWFLQAPEAKFRPGFNA
FSGTVLLSVDEAKTHSDTVVAKFSGQDDRNAAEALRGARIFLPRSSFPVASKDEYYWVDLIGLNVVNREGVPLGQVRDLM
TTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCITVDWQPDY

Sequences:

>Translated_213_residues
MRGSAAHEVASVGANSSSPAGLTPSSLPDDAIEVGRILDAWGVKGWVKILPHSTDPEALFSAKSWFLQAPEAKFRPGFNA
FSGTVLLSVDEAKTHSDTVVAKFSGQDDRNAAEALRGARIFLPRSSFPVASKDEYYWVDLIGLNVVNREGVPLGQVRDLM
TTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCITVDWQPDY
>Mature_213_residues
MRGSAAHEVASVGANSSSPAGLTPSSLPDDAIEVGRILDAWGVKGWVKILPHSTDPEALFSAKSWFLQAPEAKFRPGFNA
FSGTVLLSVDEAKTHSDTVVAKFSGQDDRNAAEALRGARIFLPRSSFPVASKDEYYWVDLIGLNVVNREGVPLGQVRDLM
TTGPHSVLCVEYTAQQEDGTAVTAERMIPFVSAYIDTVDIAGKCITVDWQPDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=187, Percent_Identity=31.5508021390374, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 22973; Mature: 22973

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGSAAHEVASVGANSSSPAGLTPSSLPDDAIEVGRILDAWGVKGWVKILPHSTDPEALF
CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
SAKSWFLQAPEAKFRPGFNAFSGTVLLSVDEAKTHSDTVVAKFSGQDDRNAAEALRGARI
HHHHHEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCCEE
FLPRSSFPVASKDEYYWVDLIGLNVVNREGVPLGQVRDLMTTGPHSVLCVEYTAQQEDGT
EECCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCC
AVTAERMIPFVSAYIDTVDIAGKCITVDWQPDY
EEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure
MRGSAAHEVASVGANSSSPAGLTPSSLPDDAIEVGRILDAWGVKGWVKILPHSTDPEALF
CCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHH
SAKSWFLQAPEAKFRPGFNAFSGTVLLSVDEAKTHSDTVVAKFSGQDDRNAAEALRGARI
HHHHHEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCCEE
FLPRSSFPVASKDEYYWVDLIGLNVVNREGVPLGQVRDLMTTGPHSVLCVEYTAQQEDGT
EECCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCC
AVTAERMIPFVSAYIDTVDIAGKCITVDWQPDY
EEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA