Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91787304
Identifier: 91787304
GI number: 91787304
Start: 1449407
End: 1450141
Strand: Direct
Name: 91787304
Synonym: Bpro_1409
Alternate gene names: NA
Gene position: 1449407-1450141 (Clockwise)
Preceding gene: 91787303
Following gene: 91787305
Centisome position: 27.87
GC content: 62.86
Gene sequence:
>735_bases ATGACGGTGCCCGTTGACGCCACACTTGAGGCAGTGCTCAGGCGCGATCGCCTGGTCGTCGTTACCGCGCTTACTGCGGT TATCGCTCTATCGTGGGCGTATCTGCTGGTCGGCGCCGGCATGGGCATGTCGGCGTTCGAGATGACCCGCATGTCGCAGC TCGGGATAGCAAGGGGCATGTCCGAATGGGGCATGGCCGGCATGGCGATGATGACGCGCGCGGTCTGGACGCCCGACTAT GCAGTCCTGATGTTCTTCATGTGGTGGGTCATGATGGTCGCGATGATGTTGCCTGGCGTGCCCCCGATGATCCTGTTGTT TGCGACGGTCAATCGCAAGCAGCGCGACACCGGCCATCCCTACGTCGCGACGAGCATTTTCGCGTTTGGCTATCTCGCCG CCGGCGTTTACCAGCTCACCCCGATAAAGCATGCCTGTCTTCGCCACTGCCGATCGCCGCTTGGATTCCTTAGTACCCAT TGGCGGCGGGGCGCCCGTGGCGCGCTACGCATGGGTCTTTTGCACGGCGCCTTCTGCGTCGGCTGCTGCTGGGCTCCTGA TGGGGCTGATGTTTTTTGGCGGCGTGATGAATCTCTACTGGATTGCGGGCCTCGCGCTGTTCGTACTGTGCGAAAAAACT GTCCCTGCGGGGCACCTGCGGGGCACTGGCTCGGCTACGCGACCGGCGTCGCTCTGCTCGTCTGGGGTGCCGGGATGCTG GCGCTCGCGTTTTAA
Upstream 100 bases:
>100_bases ATTTTTGTGTTCACCACTTCAATCAAGATGGGCTGGTCCGCGAAAGATCAAGGCTCACAGCATGGCTTGGCGCGTGACCT CCTGATCGGGTGAAAAGGGG
Downstream 100 bases:
>100_bases GAAGGGGCGTACAGGCATCACGCGGCCTGTTGGATCACGGGAGAGCAGTTCGATAGTTGAATGACTGCTTTGCTGAAAAC TGCCGATCGGGAAAAGTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MTVPVDATLEAVLRRDRLVVVTALTAVIALSWAYLLVGAGMGMSAFEMTRMSQLGIARGMSEWGMAGMAMMTRAVWTPDY AVLMFFMWWVMMVAMMLPGVPPMILLFATVNRKQRDTGHPYVATSIFAFGYLAAGVYQLTPIKHACLRHCRSPLGFLSTH WRRGARGALRMGLLHGAFCVGCCWAPDGADVFWRRDESLLDCGPRAVRTVRKNCPCGAPAGHWLGYATGVALLVWGAGML ALAF
Sequences:
>Translated_244_residues MTVPVDATLEAVLRRDRLVVVTALTAVIALSWAYLLVGAGMGMSAFEMTRMSQLGIARGMSEWGMAGMAMMTRAVWTPDY AVLMFFMWWVMMVAMMLPGVPPMILLFATVNRKQRDTGHPYVATSIFAFGYLAAGVYQLTPIKHACLRHCRSPLGFLSTH WRRGARGALRMGLLHGAFCVGCCWAPDGADVFWRRDESLLDCGPRAVRTVRKNCPCGAPAGHWLGYATGVALLVWGAGML ALAF >Mature_243_residues TVPVDATLEAVLRRDRLVVVTALTAVIALSWAYLLVGAGMGMSAFEMTRMSQLGIARGMSEWGMAGMAMMTRAVWTPDYA VLMFFMWWVMMVAMMLPGVPPMILLFATVNRKQRDTGHPYVATSIFAFGYLAAGVYQLTPIKHACLRHCRSPLGFLSTHW RRGARGALRMGLLHGAFCVGCCWAPDGADVFWRRDESLLDCGPRAVRTVRKNCPCGAPAGHWLGYATGVALLVWGAGMLA LAF
Specific function: Unknown
COG id: COG5486
COG function: function code S; Predicted metal-binding integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26725; Mature: 26594
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.3 %Cys (Translated Protein) 7.8 %Met (Translated Protein) 11.1 %Cys+Met (Translated Protein) 3.3 %Cys (Mature Protein) 7.4 %Met (Mature Protein) 10.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVPVDATLEAVLRRDRLVVVTALTAVIALSWAYLLVGAGMGMSAFEMTRMSQLGIARGM CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCH SEWGMAGMAMMTRAVWTPDYAVLMFFMWWVMMVAMMLPGVPPMILLFATVNRKQRDTGHP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC YVATSIFAFGYLAAGVYQLTPIKHACLRHCRSPLGFLSTHWRRGARGALRMGLLHGAFCV HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH GCCWAPDGADVFWRRDESLLDCGPRAVRTVRKNCPCGAPAGHWLGYATGVALLVWGAGML HEECCCCCCCEEEECCCHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH ALAF HHCC >Mature Secondary Structure TVPVDATLEAVLRRDRLVVVTALTAVIALSWAYLLVGAGMGMSAFEMTRMSQLGIARGM CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCH SEWGMAGMAMMTRAVWTPDYAVLMFFMWWVMMVAMMLPGVPPMILLFATVNRKQRDTGHP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCC YVATSIFAFGYLAAGVYQLTPIKHACLRHCRSPLGFLSTHWRRGARGALRMGLLHGAFCV HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH GCCWAPDGADVFWRRDESLLDCGPRAVRTVRKNCPCGAPAGHWLGYATGVALLVWGAGML HEECCCCCCCEEEECCCHHHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH ALAF HHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA