Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is pilH [H]
Identifier: 91787035
GI number: 91787035
Start: 1174509
End: 1174874
Strand: Direct
Name: pilH [H]
Synonym: Bpro_1137
Alternate gene names: 91787035
Gene position: 1174509-1174874 (Clockwise)
Preceding gene: 91787034
Following gene: 91787036
Centisome position: 22.59
GC content: 53.28
Gene sequence:
>366_bases ATGGCGATTAAGAAAATATTGGTAGTTGATGACTCCAAGACTGAATTGATGTTTCTGACCGATCTGCTGGTCAAGAATGG CTTCACTGTCAAAACCGCAGAAAACGCGGAAGACGCCTTTCGCCGCCTGGCCGAGGACAAGCCGGAGCTGATTCTGATGG ATGTGGTGATGCCGGGGCAAAACGGCTTCCAGCTGACGCGCGCCATTACCCGTGACCCCCTTTATTCGGACATCCCCATC ATGATGTGCACCAGTAAAAATCAGGAAACCGATCGGGTGTGGGGCATGCGTCAGGGGGCTCGCGACTACATCACCAAGCC TGTGGATGCTGATGAGTTGATGGCCAAAATCAAGGCCCTTGGCTGA
Upstream 100 bases:
>100_bases GCATGGTGGGTTCACAGGACTACCTGACCAAGCCTTTTACCAAAGATCAGCTGCTGCAGACCGTTCAGGAACTCGGCAGT GCAAAACAAGGAGTAGTTTG
Downstream 100 bases:
>100_bases TCGACAGGCGTAAAACCAGAGCATGGCGAACAGACAAGCCCTCAGAGAGCTACAAACCCGGCTGGCCGACAGGTTGCAGG TTGCGCGAACGCAGGGCGTT
Product: response regulator receiver domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MAIKKILVVDDSKTELMFLTDLLVKNGFTVKTAENAEDAFRRLAEDKPELILMDVVMPGQNGFQLTRAITRDPLYSDIPI MMCTSKNQETDRVWGMRQGARDYITKPVDADELMAKIKALG
Sequences:
>Translated_121_residues MAIKKILVVDDSKTELMFLTDLLVKNGFTVKTAENAEDAFRRLAEDKPELILMDVVMPGQNGFQLTRAITRDPLYSDIPI MMCTSKNQETDRVWGMRQGARDYITKPVDADELMAKIKALG >Mature_120_residues AIKKILVVDDSKTELMFLTDLLVKNGFTVKTAENAEDAFRRLAEDKPELILMDVVMPGQNGFQLTRAITRDPLYSDIPIM MCTSKNQETDRVWGMRQGARDYITKPVDADELMAKIKALG
Specific function: May be a part of a signal-transduction system that regulates twitching motility by controlling pilus function (extension and retraction) [H]
COG id: COG0784
COG function: function code T; FOG: CheY-like receiver
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=117, Percent_Identity=41.025641025641, Blast_Score=97, Evalue=4e-22, Organism=Escherichia coli, GI1789809, Length=116, Percent_Identity=37.9310344827586, Blast_Score=85, Evalue=1e-18, Organism=Escherichia coli, GI1788394, Length=116, Percent_Identity=35.3448275862069, Blast_Score=80, Evalue=6e-17, Organism=Escherichia coli, GI1787229, Length=117, Percent_Identity=29.9145299145299, Blast_Score=68, Evalue=2e-13, Organism=Escherichia coli, GI87082012, Length=115, Percent_Identity=27.8260869565217, Blast_Score=67, Evalue=2e-13, Organism=Escherichia coli, GI1786784, Length=116, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=5e-13, Organism=Escherichia coli, GI1786911, Length=113, Percent_Identity=28.3185840707965, Blast_Score=66, Evalue=7e-13, Organism=Escherichia coli, GI1790863, Length=120, Percent_Identity=30, Blast_Score=66, Evalue=8e-13, Organism=Escherichia coli, GI2367329, Length=118, Percent_Identity=37.2881355932203, Blast_Score=65, Evalue=1e-12, Organism=Escherichia coli, GI1790860, Length=120, Percent_Identity=27.5, Blast_Score=65, Evalue=1e-12, Organism=Escherichia coli, GI1790299, Length=114, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-12, Organism=Escherichia coli, GI1788550, Length=112, Percent_Identity=31.25, Blast_Score=63, Evalue=6e-12, Organism=Escherichia coli, GI1787375, Length=116, Percent_Identity=31.0344827586207, Blast_Score=63, Evalue=6e-12, Organism=Escherichia coli, GI1788191, Length=114, Percent_Identity=31.5789473684211, Blast_Score=60, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 [H]
Pfam domain/function: PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 13667; Mature: 13536
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 6.6 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.8 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIKKILVVDDSKTELMFLTDLLVKNGFTVKTAENAEDAFRRLAEDKPELILMDVVMPGQ CCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCEEEEEEEECCC NGFQLTRAITRDPLYSDIPIMMCTSKNQETDRVWGMRQGARDYITKPVDADELMAKIKAL CCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHC G C >Mature Secondary Structure AIKKILVVDDSKTELMFLTDLLVKNGFTVKTAENAEDAFRRLAEDKPELILMDVVMPGQ CCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHCCCCCEEEEEEEECCC NGFQLTRAITRDPLYSDIPIMMCTSKNQETDRVWGMRQGARDYITKPVDADELMAKIKAL CCHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHCCCCCCHHHCCCCCCHHHHHHHHHHC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7908398; 10984043 [H]