Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is engD [H]
Identifier: 91787025
GI number: 91787025
Start: 1165747
End: 1166838
Strand: Direct
Name: engD [H]
Synonym: Bpro_1127
Alternate gene names: 91787025
Gene position: 1165747-1166838 (Clockwise)
Preceding gene: 91787024
Following gene: 91787026
Centisome position: 22.42
GC content: 57.78
Gene sequence:
>1092_bases ATGAGTTTGAAGTGCGGCATCGTAGGCTTGCCTAACGTCGGAAAATCCACCCTGTTCAATGCGTTGACCAAAGCGGGGAT CGCGGCCGAAAACTACCCTTTTTGCACGATTGAGCCCAATGTGGGCATTGTGGAAGTGCCCGACGCACGTCTGGACGCAC TCTCTGCCATCGTCAACCCGCAAAAGGTTCAACGTGCGATTGTCGAGTTTGTGGATATTGCCGGTTTGGTGGCCGGTGCC AGCACCGGCGAGGGCCTGGGCAACAAGTTTCTGGCCCATATTCGTGAAACCGATGCCACGATCAATGTGGTGCGCTGCTT TGAAGACGACAACGTGGTTCACGTGGCCGGCAAGGTGGACCCGATCTCCGACATTGAAGTGATCCAGACCGAGTTGTGCC TGGCTGATCTCGCGGCGGTTGAAAAGGCCCTGCATCGGGTGACCAAGACCGCGCGCTCCGGCGACAAGGAGTCCGCCCGG CTGGTGGCGATTCTGGAAAAATGCCAGGCAGCCTTGAATGAAGCCAAACCCGTGCGCACCCTGGAGTTCAGCAAGGAAGA GCAACCCCTGCTGGCGCAGTTTTTCCTGATCACCGCCAAGCCCGCCATGTTTGTGGCCAACGTGGCTGAAGATGGTTTTG AGAACAATCCTTTCCTGGATCGTCTGAAAGCCTACGCGGCCGAGCAAAAGGCGCCCGTGGTGGCAATCTGCGCGAAGATG GAAGCCGAAATGGCCGACATGGAGGAAGAAGACAAAAAAATGTTCCTCGCTGAAATCGGCCAGGACGAGCCCGGGCTGAA CCGCCTGATCATGGCCGCCTACAAGCTGCTGGGCCTGCAGACCTACTTCACGGCGGGCGTGAAGGAAGTGCGTGCCTGGA CCATCCATGTTGGCGATACCGGCCCGCAAGCCGCCGGCGTGATTCACACCGATTTCGAGAAGGGCTACATCCGTGCCCAG ACCATTGCATATGATGACTTCATCGCCTTCAAGGGTGAGCAGGGTGCCAAAGACGCCGGCAAGATGCGCAGTGAAGGCAA GGACTACGTCGTCAAGGATGGCGACGTGATGAACTTCCTGTTCAGCAGCTGA
Upstream 100 bases:
>100_bases AGCCTGCGCTGGGGCTAACACGCCCGGGCCCGATGAGGCGCCGGGAACGTCCGTTTCCGGGCATCGAATACACTTCTGGA TCTGTTTTTGAAGGTTTGTC
Downstream 100 bases:
>100_bases AACTGGCCGATTGCCGCCCGGCAGGAAATCGTTCAAGCCTCTTGCCATGGTCGTCGCGGAACGAGGGCCGAAAGCTGATT TTTGATGGCCATCGGGCGCT
Product: GTP-dependent nucleic acid-binding protein EngD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 363; Mature: 362
Protein sequence:
>363_residues MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDARLDALSAIVNPQKVQRAIVEFVDIAGLVAGA STGEGLGNKFLAHIRETDATINVVRCFEDDNVVHVAGKVDPISDIEVIQTELCLADLAAVEKALHRVTKTARSGDKESAR LVAILEKCQAALNEAKPVRTLEFSKEEQPLLAQFFLITAKPAMFVANVAEDGFENNPFLDRLKAYAAEQKAPVVAICAKM EAEMADMEEEDKKMFLAEIGQDEPGLNRLIMAAYKLLGLQTYFTAGVKEVRAWTIHVGDTGPQAAGVIHTDFEKGYIRAQ TIAYDDFIAFKGEQGAKDAGKMRSEGKDYVVKDGDVMNFLFSS
Sequences:
>Translated_363_residues MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDARLDALSAIVNPQKVQRAIVEFVDIAGLVAGA STGEGLGNKFLAHIRETDATINVVRCFEDDNVVHVAGKVDPISDIEVIQTELCLADLAAVEKALHRVTKTARSGDKESAR LVAILEKCQAALNEAKPVRTLEFSKEEQPLLAQFFLITAKPAMFVANVAEDGFENNPFLDRLKAYAAEQKAPVVAICAKM EAEMADMEEEDKKMFLAEIGQDEPGLNRLIMAAYKLLGLQTYFTAGVKEVRAWTIHVGDTGPQAAGVIHTDFEKGYIRAQ TIAYDDFIAFKGEQGAKDAGKMRSEGKDYVVKDGDVMNFLFSS >Mature_362_residues SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDARLDALSAIVNPQKVQRAIVEFVDIAGLVAGAS TGEGLGNKFLAHIRETDATINVVRCFEDDNVVHVAGKVDPISDIEVIQTELCLADLAAVEKALHRVTKTARSGDKESARL VAILEKCQAALNEAKPVRTLEFSKEEQPLLAQFFLITAKPAMFVANVAEDGFENNPFLDRLKAYAAEQKAPVVAICAKME AEMADMEEEDKKMFLAEIGQDEPGLNRLIMAAYKLLGLQTYFTAGVKEVRAWTIHVGDTGPQAAGVIHTDFEKGYIRAQT IAYDDFIAFKGEQGAKDAGKMRSEGKDYVVKDGDVMNFLFSS
Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]
COG id: COG0012
COG function: function code J; Predicted GTPase, probable translation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI58761500, Length=369, Percent_Identity=41.7344173441734, Blast_Score=287, Evalue=9e-78, Organism=Homo sapiens, GI58761502, Length=218, Percent_Identity=34.4036697247706, Blast_Score=135, Evalue=8e-32, Organism=Escherichia coli, GI1787454, Length=362, Percent_Identity=64.0883977900553, Blast_Score=493, Evalue=1e-141, Organism=Escherichia coli, GI1789574, Length=127, Percent_Identity=30.7086614173228, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17509631, Length=367, Percent_Identity=42.2343324250681, Blast_Score=289, Evalue=1e-78, Organism=Saccharomyces cerevisiae, GI6319499, Length=370, Percent_Identity=38.3783783783784, Blast_Score=246, Evalue=4e-66, Organism=Saccharomyces cerevisiae, GI6321773, Length=382, Percent_Identity=32.7225130890052, Blast_Score=195, Evalue=8e-51, Organism=Saccharomyces cerevisiae, GI6321649, Length=179, Percent_Identity=36.8715083798883, Blast_Score=87, Evalue=3e-18, Organism=Drosophila melanogaster, GI24640873, Length=368, Percent_Identity=39.945652173913, Blast_Score=277, Evalue=9e-75, Organism=Drosophila melanogaster, GI24640877, Length=368, Percent_Identity=39.945652173913, Blast_Score=277, Evalue=9e-75, Organism=Drosophila melanogaster, GI24640875, Length=368, Percent_Identity=39.945652173913, Blast_Score=277, Evalue=9e-75, Organism=Drosophila melanogaster, GI24640879, Length=326, Percent_Identity=37.1165644171779, Blast_Score=219, Evalue=3e-57, Organism=Drosophila melanogaster, GI24585318, Length=187, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012675 - InterPro: IPR004396 - InterPro: IPR013029 - InterPro: IPR006073 - InterPro: IPR002917 - InterPro: IPR012676 - InterPro: IPR023192 [H]
Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]
EC number: NA
Molecular weight: Translated: 39349; Mature: 39217
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS00443 GATASE_TYPE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDARLDALSAIVNP CCCEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHCCH QKVQRAIVEFVDIAGLVAGASTGEGLGNKFLAHIRETDATINVVRCFEDDNVVHVAGKVD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCC PISDIEVIQTELCLADLAAVEKALHRVTKTARSGDKESARLVAILEKCQAALNEAKPVRT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE LEFSKEEQPLLAQFFLITAKPAMFVANVAEDGFENNPFLDRLKAYAAEQKAPVVAICAKM EECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEHHHHH EAEMADMEEEDKKMFLAEIGQDEPGLNRLIMAAYKLLGLQTYFTAGVKEVRAWTIHVGDT HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC GPQAAGVIHTDFEKGYIRAQTIAYDDFIAFKGEQGAKDAGKMRSEGKDYVVKDGDVMNFL CCCCCCEEEECCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHCCCCCEEEECCCHHHHH FSS HCC >Mature Secondary Structure SLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDARLDALSAIVNP CCEECEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCHHHHHHHHHCCH QKVQRAIVEFVDIAGLVAGASTGEGLGNKFLAHIRETDATINVVRCFEDDNVVHVAGKVD HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCC PISDIEVIQTELCLADLAAVEKALHRVTKTARSGDKESARLVAILEKCQAALNEAKPVRT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE LEFSKEEQPLLAQFFLITAKPAMFVANVAEDGFENNPFLDRLKAYAAEQKAPVVAICAKM EECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEHHHHH EAEMADMEEEDKKMFLAEIGQDEPGLNRLIMAAYKLLGLQTYFTAGVKEVRAWTIHVGDT HHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCC GPQAAGVIHTDFEKGYIRAQTIAYDDFIAFKGEQGAKDAGKMRSEGKDYVVKDGDVMNFL CCCCCCEEEECCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHCCCCCEEEECCCHHHHH FSS HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]