Definition Polaromonas sp. JS666 chromosome, complete genome.
Accession NC_007948
Length 5,200,264

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The map label for this gene is tldD [H]

Identifier: 91786991

GI number: 91786991

Start: 1125950

End: 1127431

Strand: Direct

Name: tldD [H]

Synonym: Bpro_1093

Alternate gene names: 91786991

Gene position: 1125950-1127431 (Clockwise)

Preceding gene: 91786990

Following gene: 91786992

Centisome position: 21.65

GC content: 63.97

Gene sequence:

>1482_bases
GTGGGGGCCGGACCGCTGGCGCGTCCTACGCACGAGTCCACCTCACAGCGTCTTCTCATTGCGCAAAAGCTCCTGCTTGA
ACCGTTCGGGCTGACTGATGCCGCGCTGAACCGCGCCCTGGGTGAGATCACGTCCCATGGGGTGGATGATGCCGACCTGT
ACTTCCAGTACACCCGCAGCGAAGGCTGGAGCCTGGAAGAAGGCATTGTCAAAACCGGATCTTTCAGCATCGACCAGGGC
GTCGGTGTGCGCGCCGTGAGCGGCGAAAAGACGGCATTCGCCTATTCCGACGACATCTCTGAAGCCTCGCTGCTCGACGC
AGCGCGCACCGTGCGCAGCATTTCTGCCGCCAGCAAGGCCGGCCGCGTGAAAACACCGCAGCGAAAAATTGCCAGCAGCC
GCTCGCTCTACCAGGACCTGGACCCCATTGCCACGCTGGACAGTACCGCCAAGGTCAAGCTGCTGGAAAAAGTGGAAAAA
CTCGCCAAAGCCAAAGACCCGCGCATTGTGCAGGTGATGGCCGGACTGGCCAGCGAGTACGACGTGGTGATGGTGGCCCG
CGCCGACGGCACGCTGGCCGCCGATGTGCGCCCCCTGGTGCGCCTGAGCGTGACGGTCATTGCCGAGCAAAAGGGCCGCC
GTGAGATGGGCTCGGGCGGTGGCGGCGGCCGTTTTGGCCTGGCCTATTTTGACGACGCGCAGATTGCGCAGTATGTGGAT
GATGCGGTGAAGGCCGCGCTGACCAACCTGGACGCGCGCCCCGCGCCTGCCGGTGAAATGACCGTGGTGCTCGGCCCCGG
CTGGCCCGGCATTTTGCTGCACGAAGCGATTGGCCACGGACTGGAAGGCGACTTCAACCGCAAGGGCTCCAGCGCGTTTT
CAGGCCGCATTGGCCAGCGCGTTGCTGCCAAAGGCGTGACGGTGCTGGACGACGGCACCATCGCCGACCGCCGCGGCTCG
CTCAATGTGGATGACGAAGGCCATGCCAGCCAGCGCAACGTATTGATTGAAGACGGCATCCTGAAGGGCTACATCCAGGA
CTCGCTTAATGCCCGCCTGATGAAGGTCAAGCCCACCGGCAATGGCCGACGCGAGAGCTACGCCCATGTGCCCATGCCGC
GCATGACCAACACCTACATGCTGGGCGGCGACAAGGCGCCTGAAGAGATTGTGGCCAGTATCAAAAAAGGCCTGTACGCC
ACCAACTTCGGCGGCGGCCAGGTTGACATCACCTCCGGCAAGTTTGTTTTCTCGGCCAGCGAGGCGTTCTGGGTTGAAAA
CGGCAAGATCCTGTACCCGGTGAAGGGCGCCACGATTGTGGGCAACGGCCCGGATGCGCTGACCCGCGTCACCATGATGG
GCAATGACATGCAGCTGGACAGCGGCGTGGGCACCTGCGGCAAGGAAGGCCAGAGCGTGCCGGTGGGTGTCGGCCAGCCG
ACGCTGCGCATCGACGGGCTGACCGTGGGCGGGACCGCGTAA

Upstream 100 bases:

>100_bases
ATGGCCCGGGCGCCGGGGTCGGGTGCTTCGGGGCCAGACTGCCTACAATGGCTGCATGATCTCACTCAAATCCGCCGCCG
TGTCCGCTCGTCAAACCAGC

Downstream 100 bases:

>100_bases
ATTGCCGTCAGAGGCGGTATTTGCGGGCCTTTTTCAGACCTGTGCTACATTCCAACCCATGACTTCAGCGAAATTTTATT
TCGGTTACTTTTGGTTCTCA

Product: microcin-processing peptidase 2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MGAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRSEGWSLEEGIVKTGSFSIDQG
VGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKAGRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEK
LAKAKDPRIVQVMAGLASEYDVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD
DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQRVAAKGVTVLDDGTIADRRGS
LNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTGNGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYA
TNFGGGQVDITSGKFVFSASEAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP
TLRIDGLTVGGTA

Sequences:

>Translated_493_residues
MGAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRSEGWSLEEGIVKTGSFSIDQG
VGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKAGRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEK
LAKAKDPRIVQVMAGLASEYDVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD
DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQRVAAKGVTVLDDGTIADRRGS
LNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTGNGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYA
TNFGGGQVDITSGKFVFSASEAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP
TLRIDGLTVGGTA
>Mature_492_residues
GAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRSEGWSLEEGIVKTGSFSIDQGV
GVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKAGRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEKL
AKAKDPRIVQVMAGLASEYDVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVDD
AVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQRVAAKGVTVLDDGTIADRRGSL
NVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTGNGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYAT
NFGGGQVDITSGKFVFSASEAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQPT
LRIDGLTVGGTA

Specific function: Suppresses The Inhibitory Activity Of The Carbon Storage Regulator (Csra). [C]

COG id: COG0312

COG function: function code R; Predicted Zn-dependent proteases and their inactivated homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U62 family [H]

Homologues:

Organism=Escherichia coli, GI1789640, Length=481, Percent_Identity=56.3409563409563, Blast_Score=529, Evalue=1e-151,
Organism=Escherichia coli, GI1790682, Length=456, Percent_Identity=25.219298245614, Blast_Score=96, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002510 [H]

Pfam domain/function: PF01523 PmbA_TldD [H]

EC number: NA

Molecular weight: Translated: 52011; Mature: 51879

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRS
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
EGWSLEEGIVKTGSFSIDQGVGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKA
CCCCHHHCCEECCCEECCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
GRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEKLAKAKDPRIVQVMAGLASEY
CCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
DVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD
CEEEEEECCCCEECCCHHHHHEEEEEEECCCCCHHHCCCCCCCCEEEEEECCHHHHHHHH
DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQR
HHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
VAAKGVTVLDDGTIADRRGSLNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTG
HHHCCCEEEECCCEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCEEEEEECCC
NGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYATNFGGGQVDITSGKFVFSAS
CCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCEEEEECCEEEEECC
EAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP
CEEEEECCEEEEEECCCEEECCCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCC
TLRIDGLTVGGTA
EEEECCEECCCCC
>Mature Secondary Structure 
GAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRS
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECC
EGWSLEEGIVKTGSFSIDQGVGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKA
CCCCHHHCCEECCCEECCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC
GRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEKLAKAKDPRIVQVMAGLASEY
CCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
DVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD
CEEEEEECCCCEECCCHHHHHEEEEEEECCCCCHHHCCCCCCCCEEEEEECCHHHHHHHH
DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQR
HHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
VAAKGVTVLDDGTIADRRGSLNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTG
HHHCCCEEEECCCEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCEEEEEECCC
NGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYATNFGGGQVDITSGKFVFSAS
CCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCEEEEECCEEEEECC
EAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP
CEEEEECCEEEEEECCCEEECCCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCC
TLRIDGLTVGGTA
EEEECCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]