Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is tldD [H]
Identifier: 91786991
GI number: 91786991
Start: 1125950
End: 1127431
Strand: Direct
Name: tldD [H]
Synonym: Bpro_1093
Alternate gene names: 91786991
Gene position: 1125950-1127431 (Clockwise)
Preceding gene: 91786990
Following gene: 91786992
Centisome position: 21.65
GC content: 63.97
Gene sequence:
>1482_bases GTGGGGGCCGGACCGCTGGCGCGTCCTACGCACGAGTCCACCTCACAGCGTCTTCTCATTGCGCAAAAGCTCCTGCTTGA ACCGTTCGGGCTGACTGATGCCGCGCTGAACCGCGCCCTGGGTGAGATCACGTCCCATGGGGTGGATGATGCCGACCTGT ACTTCCAGTACACCCGCAGCGAAGGCTGGAGCCTGGAAGAAGGCATTGTCAAAACCGGATCTTTCAGCATCGACCAGGGC GTCGGTGTGCGCGCCGTGAGCGGCGAAAAGACGGCATTCGCCTATTCCGACGACATCTCTGAAGCCTCGCTGCTCGACGC AGCGCGCACCGTGCGCAGCATTTCTGCCGCCAGCAAGGCCGGCCGCGTGAAAACACCGCAGCGAAAAATTGCCAGCAGCC GCTCGCTCTACCAGGACCTGGACCCCATTGCCACGCTGGACAGTACCGCCAAGGTCAAGCTGCTGGAAAAAGTGGAAAAA CTCGCCAAAGCCAAAGACCCGCGCATTGTGCAGGTGATGGCCGGACTGGCCAGCGAGTACGACGTGGTGATGGTGGCCCG CGCCGACGGCACGCTGGCCGCCGATGTGCGCCCCCTGGTGCGCCTGAGCGTGACGGTCATTGCCGAGCAAAAGGGCCGCC GTGAGATGGGCTCGGGCGGTGGCGGCGGCCGTTTTGGCCTGGCCTATTTTGACGACGCGCAGATTGCGCAGTATGTGGAT GATGCGGTGAAGGCCGCGCTGACCAACCTGGACGCGCGCCCCGCGCCTGCCGGTGAAATGACCGTGGTGCTCGGCCCCGG CTGGCCCGGCATTTTGCTGCACGAAGCGATTGGCCACGGACTGGAAGGCGACTTCAACCGCAAGGGCTCCAGCGCGTTTT CAGGCCGCATTGGCCAGCGCGTTGCTGCCAAAGGCGTGACGGTGCTGGACGACGGCACCATCGCCGACCGCCGCGGCTCG CTCAATGTGGATGACGAAGGCCATGCCAGCCAGCGCAACGTATTGATTGAAGACGGCATCCTGAAGGGCTACATCCAGGA CTCGCTTAATGCCCGCCTGATGAAGGTCAAGCCCACCGGCAATGGCCGACGCGAGAGCTACGCCCATGTGCCCATGCCGC GCATGACCAACACCTACATGCTGGGCGGCGACAAGGCGCCTGAAGAGATTGTGGCCAGTATCAAAAAAGGCCTGTACGCC ACCAACTTCGGCGGCGGCCAGGTTGACATCACCTCCGGCAAGTTTGTTTTCTCGGCCAGCGAGGCGTTCTGGGTTGAAAA CGGCAAGATCCTGTACCCGGTGAAGGGCGCCACGATTGTGGGCAACGGCCCGGATGCGCTGACCCGCGTCACCATGATGG GCAATGACATGCAGCTGGACAGCGGCGTGGGCACCTGCGGCAAGGAAGGCCAGAGCGTGCCGGTGGGTGTCGGCCAGCCG ACGCTGCGCATCGACGGGCTGACCGTGGGCGGGACCGCGTAA
Upstream 100 bases:
>100_bases ATGGCCCGGGCGCCGGGGTCGGGTGCTTCGGGGCCAGACTGCCTACAATGGCTGCATGATCTCACTCAAATCCGCCGCCG TGTCCGCTCGTCAAACCAGC
Downstream 100 bases:
>100_bases ATTGCCGTCAGAGGCGGTATTTGCGGGCCTTTTTCAGACCTGTGCTACATTCCAACCCATGACTTCAGCGAAATTTTATT TCGGTTACTTTTGGTTCTCA
Product: microcin-processing peptidase 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MGAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRSEGWSLEEGIVKTGSFSIDQG VGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKAGRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEK LAKAKDPRIVQVMAGLASEYDVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQRVAAKGVTVLDDGTIADRRGS LNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTGNGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYA TNFGGGQVDITSGKFVFSASEAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP TLRIDGLTVGGTA
Sequences:
>Translated_493_residues MGAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRSEGWSLEEGIVKTGSFSIDQG VGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKAGRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEK LAKAKDPRIVQVMAGLASEYDVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQRVAAKGVTVLDDGTIADRRGS LNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTGNGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYA TNFGGGQVDITSGKFVFSASEAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP TLRIDGLTVGGTA >Mature_492_residues GAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRSEGWSLEEGIVKTGSFSIDQGV GVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKAGRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEKL AKAKDPRIVQVMAGLASEYDVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVDD AVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQRVAAKGVTVLDDGTIADRRGSL NVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTGNGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYAT NFGGGQVDITSGKFVFSASEAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQPT LRIDGLTVGGTA
Specific function: Suppresses The Inhibitory Activity Of The Carbon Storage Regulator (Csra). [C]
COG id: COG0312
COG function: function code R; Predicted Zn-dependent proteases and their inactivated homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U62 family [H]
Homologues:
Organism=Escherichia coli, GI1789640, Length=481, Percent_Identity=56.3409563409563, Blast_Score=529, Evalue=1e-151, Organism=Escherichia coli, GI1790682, Length=456, Percent_Identity=25.219298245614, Blast_Score=96, Evalue=8e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002510 [H]
Pfam domain/function: PF01523 PmbA_TldD [H]
EC number: NA
Molecular weight: Translated: 52011; Mature: 51879
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRS CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECC EGWSLEEGIVKTGSFSIDQGVGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKA CCCCHHHCCEECCCEECCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC GRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEKLAKAKDPRIVQVMAGLASEY CCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC DVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD CEEEEEECCCCEECCCHHHHHEEEEEEECCCCCHHHCCCCCCCCEEEEEECCHHHHHHHH DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQR HHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH VAAKGVTVLDDGTIADRRGSLNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTG HHHCCCEEEECCCEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCEEEEEECCC NGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYATNFGGGQVDITSGKFVFSAS CCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCEEEEECCEEEEECC EAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP CEEEEECCEEEEEECCCEEECCCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCC TLRIDGLTVGGTA EEEECCEECCCCC >Mature Secondary Structure GAGPLARPTHESTSQRLLIAQKLLLEPFGLTDAALNRALGEITSHGVDDADLYFQYTRS CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECC EGWSLEEGIVKTGSFSIDQGVGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISAASKA CCCCHHHCCEECCCEECCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHC GRVKTPQRKIASSRSLYQDLDPIATLDSTAKVKLLEKVEKLAKAKDPRIVQVMAGLASEY CCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC DVVMVARADGTLAADVRPLVRLSVTVIAEQKGRREMGSGGGGGRFGLAYFDDAQIAQYVD CEEEEEECCCCEECCCHHHHHEEEEEEECCCCCHHHCCCCCCCCEEEEEECCHHHHHHHH DAVKAALTNLDARPAPAGEMTVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSGRIGQR HHHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH VAAKGVTVLDDGTIADRRGSLNVDDEGHASQRNVLIEDGILKGYIQDSLNARLMKVKPTG HHHCCCEEEECCCEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCEEEEEECCC NGRRESYAHVPMPRMTNTYMLGGDKAPEEIVASIKKGLYATNFGGGQVDITSGKFVFSAS CCCCCCEECCCCCCCCCEEEECCCCCHHHHHHHHHHCCEEECCCCCEEEEECCEEEEECC EAFWVENGKILYPVKGATIVGNGPDALTRVTMMGNDMQLDSGVGTCGKEGQSVPVGVGQP CEEEEECCEEEEEECCCEEECCCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCC TLRIDGLTVGGTA EEEECCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]