Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is 91786886
Identifier: 91786886
GI number: 91786886
Start: 1003320
End: 1004519
Strand: Direct
Name: 91786886
Synonym: Bpro_0986
Alternate gene names: NA
Gene position: 1003320-1004519 (Clockwise)
Preceding gene: 91786885
Following gene: 91786887
Centisome position: 19.29
GC content: 62.83
Gene sequence:
>1200_bases ATGAGACAAGAGAACATGACCACGACACCCACGACCTCCTTTCGCCGCACCGCGCTCGCCGCCCTGGCGGGTGTGGCACT TGCAGGCGTCAGCCAGCTCGCCGCAGCCGCCACCATCGGCATCATGGCGCCCCTGTCCGGCCCGCAGGCCATCGTCGGCC AGGACCAGGTCGACGGGTTCATGCTGGCGGTCGGGCAACTGGGCGGCAAGCTCGGCGGTCAACCCGCCACCATACTGAAG GAAGACGACCAGCTCAAGCCGGAAATCGGCAGCCAGATCGTGCGCAAGTTCATCGGCAAGGACAAGGTCGATGCCATTGT GGGCCTGAGTTTTTCCAACGTGCTGATGGCGAGTCTGCCGCGCATCGCCGAGTCGGGCACGGTGGCCATCGCCACCAATG CCGGCCCATCGCCGTTGGCCGGCGCGGGTTGCAAGGCCAATGTATTTTCTGCCGCCTGGCAGAACGACGGCGCCGCCGAA GCCATGGGCAAGTTTGCCCAGGATAAGGGCCTGAAAAAAGTCTACCTGATGGCGCCCAACTACCAGGCCGGCAAGGACAT GATGACTGGCTTCAAGCGCTACTTCAAAGGCCAGATTGTGGATGAGGTTTACACACAGGTGAACCAGCCCGACTACTCGG CCGAACTGGCGCAACTGCAGTCAGCCAAGCCCGACGCGGTGTTTGTGTTCTACCCTGGCGGCATGGGCGTCAACTTCATC AAGCAGATGAGCCAGGCTGGCCTGATGGCCAAGGTGCCGCTGTATTCCGTCTTCACTGTCGATGGCACGACCTTGCCGGG CCTGCATGATGCGGCGGTGGGCAGCGTCAGCGGTGCGATGTGGGACGCGGCGCTCGACACGCCGGAGAACAGGAAATTCG TCGCCGACTTCGAGCGCAAGTACAAACGTACTCCCAGCGAATACGCGGCGACGGCCTACGACGCGGCCAATATTCTGAAC ATCGCGCTCGGCAAGGCCAAGGCCGGCGACGCCAAGGCGCTTGCCGTCGCGGTCAAGGCGGCCGGCAGTGAGTTCAAGTC GGTGCGAGGCCCGTTTGCGTTCAACAATAACAACCTGCCGGTGCAGAACTACTATGCGTTCGAAACCATCAAGAGCGGCA GCAGCGTCGTCGGAAAGCTCGTCGCAACGCCGCTGACCCGGCAGACCGATGCCTACCACGCACAATGCGCGCTGAAGTGA
Upstream 100 bases:
>100_bases TTCGCAGCTACCCCGTGCGCATCGAAGGCGGGCGCGTATTTGTGCAGATGTCTGACTGACCCGCAGCTGCCCCATCCTTC CCTCACCCTATCAACACAAC
Downstream 100 bases:
>100_bases CACCATGAACAGCACGCTTGTTTTCGCGCAGCTGCTCAACGGCCTGCAATACGGCGTCCTGCTGTTTCTGCTGGCTGCAG GCCTGACGCTGGTCTTCGGC
Product: extracellular ligand-binding receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 399
Protein sequence:
>399_residues MRQENMTTTPTTSFRRTALAALAGVALAGVSQLAAAATIGIMAPLSGPQAIVGQDQVDGFMLAVGQLGGKLGGQPATILK EDDQLKPEIGSQIVRKFIGKDKVDAIVGLSFSNVLMASLPRIAESGTVAIATNAGPSPLAGAGCKANVFSAAWQNDGAAE AMGKFAQDKGLKKVYLMAPNYQAGKDMMTGFKRYFKGQIVDEVYTQVNQPDYSAELAQLQSAKPDAVFVFYPGGMGVNFI KQMSQAGLMAKVPLYSVFTVDGTTLPGLHDAAVGSVSGAMWDAALDTPENRKFVADFERKYKRTPSEYAATAYDAANILN IALGKAKAGDAKALAVAVKAAGSEFKSVRGPFAFNNNNLPVQNYYAFETIKSGSSVVGKLVATPLTRQTDAYHAQCALK
Sequences:
>Translated_399_residues MRQENMTTTPTTSFRRTALAALAGVALAGVSQLAAAATIGIMAPLSGPQAIVGQDQVDGFMLAVGQLGGKLGGQPATILK EDDQLKPEIGSQIVRKFIGKDKVDAIVGLSFSNVLMASLPRIAESGTVAIATNAGPSPLAGAGCKANVFSAAWQNDGAAE AMGKFAQDKGLKKVYLMAPNYQAGKDMMTGFKRYFKGQIVDEVYTQVNQPDYSAELAQLQSAKPDAVFVFYPGGMGVNFI KQMSQAGLMAKVPLYSVFTVDGTTLPGLHDAAVGSVSGAMWDAALDTPENRKFVADFERKYKRTPSEYAATAYDAANILN IALGKAKAGDAKALAVAVKAAGSEFKSVRGPFAFNNNNLPVQNYYAFETIKSGSSVVGKLVATPLTRQTDAYHAQCALK >Mature_399_residues MRQENMTTTPTTSFRRTALAALAGVALAGVSQLAAAATIGIMAPLSGPQAIVGQDQVDGFMLAVGQLGGKLGGQPATILK EDDQLKPEIGSQIVRKFIGKDKVDAIVGLSFSNVLMASLPRIAESGTVAIATNAGPSPLAGAGCKANVFSAAWQNDGAAE AMGKFAQDKGLKKVYLMAPNYQAGKDMMTGFKRYFKGQIVDEVYTQVNQPDYSAELAQLQSAKPDAVFVFYPGGMGVNFI KQMSQAGLMAKVPLYSVFTVDGTTLPGLHDAAVGSVSGAMWDAALDTPENRKFVADFERKYKRTPSEYAATAYDAANILN IALGKAKAGDAKALAVAVKAAGSEFKSVRGPFAFNNNNLPVQNYYAFETIKSGSSVVGKLVATPLTRQTDAYHAQCALK
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: COG0683
COG function: function code E; ABC-type branched-chain amino acid transport systems, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 41946; Mature: 41946
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQENMTTTPTTSFRRTALAALAGVALAGVSQLAAAATIGIMAPLSGPQAIVGQDQVDGF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHH MLAVGQLGGKLGGQPATILKEDDQLKPEIGSQIVRKFIGKDKVDAIVGLSFSNVLMASLP HHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHEECCCHHHHHHHHHH RIAESGTVAIATNAGPSPLAGAGCKANVFSAAWQNDGAAEAMGKFAQDKGLKKVYLMAPN HHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCC YQAGKDMMTGFKRYFKGQIVDEVYTQVNQPDYSAELAQLQSAKPDAVFVFYPGGMGVNFI CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHH KQMSQAGLMAKVPLYSVFTVDGTTLPGLHDAAVGSVSGAMWDAALDTPENRKFVADFERK HHHHHCCCEEECCEEEEEEECCCCCCCCHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHH YKRTPSEYAATAYDAANILNIALGKAKAGDAKALAVAVKAAGSEFKSVRGPFAFNNNNLP HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHCCCCEECCCCCC VQNYYAFETIKSGSSVVGKLVATPLTRQTDAYHAQCALK CCEEEEHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECC >Mature Secondary Structure MRQENMTTTPTTSFRRTALAALAGVALAGVSQLAAAATIGIMAPLSGPQAIVGQDQVDGF CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCHH MLAVGQLGGKLGGQPATILKEDDQLKPEIGSQIVRKFIGKDKVDAIVGLSFSNVLMASLP HHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCHHHHEECCCHHHHHHHHHH RIAESGTVAIATNAGPSPLAGAGCKANVFSAAWQNDGAAEAMGKFAQDKGLKKVYLMAPN HHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCC YQAGKDMMTGFKRYFKGQIVDEVYTQVNQPDYSAELAQLQSAKPDAVFVFYPGGMGVNFI CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHH KQMSQAGLMAKVPLYSVFTVDGTTLPGLHDAAVGSVSGAMWDAALDTPENRKFVADFERK HHHHHCCCEEECCEEEEEEECCCCCCCCHHHHHHHHCHHHHHHHCCCCCCCCHHHHHHHH YKRTPSEYAATAYDAANILNIALGKAKAGDAKALAVAVKAAGSEFKSVRGPFAFNNNNLP HCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHCCCCEECCCCCC VQNYYAFETIKSGSSVVGKLVATPLTRQTDAYHAQCALK CCEEEEHHHHCCCHHHHHHHHHCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA