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The map label for this gene is yfeR [H]

Identifier: 91786876

GI number: 91786876

Start: 993112

End: 994041

Strand: Direct

Name: yfeR [H]

Synonym: Bpro_0975

Alternate gene names: 91786876

Gene position: 993112-994041 (Clockwise)

Preceding gene: 91786869

Following gene: 91786878

Centisome position: 19.1

GC content: 64.19

Gene sequence:

>930_bases
ATGAATGTCACTCTTCGCCAGATCCAAGCCTTCGTCCTGGTCGCCCGGCTTGGCAGCTTCACCCGGGCCGCGCAGGCGAT
GCACCTCACGCAATCGGCCCTCAGCTTGCTTGTGCGCGAATTTGAAGGAGCTATCGAGAGCCGGCTGTTCGACCGGACTA
CCCGAGCCGTCACCCTGACGGTGGTGGGAAGCGACCTCTTCCCTCGGGCGGAGCGTATCCTCGCTGACCTAGAGTCGGCT
ATTTCAGGTGTGGACAAGCTCATGGCGAGGGAGCGCGGGCGCGTGGTGGTGGCTGCTCCACTGCTTCTGTCCAGCACCTA
TCTTCCGCCGCTGCTTGCGGCCTTCTTTGCGAAGTACCCGGGCATTGAGGTCGTTCTCCAGGACACGCTGCCCAGTCAGG
TTCTGCCGCTGGTGCGTGGCGGTGCGGCCGACGTGGGTATCGGCACGTTCGCGTCCGATGAAGTCGACGTCAGGCGTACC
TTGCTCTTCTCGGAAGCCATGGTGGCCGCATTCCCCGTTGGGCATGCGTTCAGCCGCCTGCAGAAGTTGACCTGGGCGGA
TGTCGCGCAGGAGCCGGTGCTCGCATTGAGCCGTGGCAGCGTGTTCCGCGATCTCACCGAAGCTGGCTTCGCGGCTGCCG
GGTTGATACTGAAGCCCGCGAGGGAGGCTAACTATGCGGGCTCTCTCATCGGAATGGTCGACGCAGGGCTCGGCGTCGCC
ATCCTCCCCGGCTACGCAGTGAAGCTGACAGACCCGGCGCGGATCGGATGGCACCGTGTGGAGAACCCGCTGATCGACCG
GGAGGTTTCACTCGTGCAACGAGCAGGCGTTTCGCTCTCCCCCGCGGCACAAGGTTTCGTCGATTTCATTGTGGCGCCGC
AGGCATCACAGCATCCGAGACCCAGAAGGCGGCGCCCGGCAGCGTCTTGA

Upstream 100 bases:

>100_bases
GTGCAGATCGGGTCTTTACCGCCCTGCACTGGTAGTGATTAGAAGATCAAACGGGCTATATTTCAAACGAGACTTTCTAA
TCAAATGATAGGCTCCGCTC

Downstream 100 bases:

>100_bases
TCCGGTCTTGGTCGTCGCGTGTGAAGACCAGCGATCGTCGGCCAAATGATCAAAGAAAAAAGCACTCTCCGGAGTGCTTT
TTTCTTTCTTCCCCTGCCAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNVTLRQIQAFVLVARLGSFTRAAQAMHLTQSALSLLVREFEGAIESRLFDRTTRAVTLTVVGSDLFPRAERILADLESA
ISGVDKLMARERGRVVVAAPLLLSSTYLPPLLAAFFAKYPGIEVVLQDTLPSQVLPLVRGGAADVGIGTFASDEVDVRRT
LLFSEAMVAAFPVGHAFSRLQKLTWADVAQEPVLALSRGSVFRDLTEAGFAAAGLILKPAREANYAGSLIGMVDAGLGVA
ILPGYAVKLTDPARIGWHRVENPLIDREVSLVQRAGVSLSPAAQGFVDFIVAPQASQHPRPRRRRPAAS

Sequences:

>Translated_309_residues
MNVTLRQIQAFVLVARLGSFTRAAQAMHLTQSALSLLVREFEGAIESRLFDRTTRAVTLTVVGSDLFPRAERILADLESA
ISGVDKLMARERGRVVVAAPLLLSSTYLPPLLAAFFAKYPGIEVVLQDTLPSQVLPLVRGGAADVGIGTFASDEVDVRRT
LLFSEAMVAAFPVGHAFSRLQKLTWADVAQEPVLALSRGSVFRDLTEAGFAAAGLILKPAREANYAGSLIGMVDAGLGVA
ILPGYAVKLTDPARIGWHRVENPLIDREVSLVQRAGVSLSPAAQGFVDFIVAPQASQHPRPRRRRPAAS
>Mature_309_residues
MNVTLRQIQAFVLVARLGSFTRAAQAMHLTQSALSLLVREFEGAIESRLFDRTTRAVTLTVVGSDLFPRAERILADLESA
ISGVDKLMARERGRVVVAAPLLLSSTYLPPLLAAFFAKYPGIEVVLQDTLPSQVLPLVRGGAADVGIGTFASDEVDVRRT
LLFSEAMVAAFPVGHAFSRLQKLTWADVAQEPVLALSRGSVFRDLTEAGFAAAGLILKPAREANYAGSLIGMVDAGLGVA
ILPGYAVKLTDPARIGWHRVENPLIDREVSLVQRAGVSLSPAAQGFVDFIVAPQASQHPRPRRRRPAAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=32.0689655172414, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=27.8350515463918, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789204, Length=244, Percent_Identity=29.5081967213115, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI157672245, Length=284, Percent_Identity=26.056338028169, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=27.4576271186441, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788297, Length=292, Percent_Identity=28.4246575342466, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788887, Length=250, Percent_Identity=28.8, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790399, Length=287, Percent_Identity=27.5261324041812, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787601, Length=216, Percent_Identity=25, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI2367136, Length=252, Percent_Identity=22.2222222222222, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788481, Length=244, Percent_Identity=27.8688524590164, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=27.8884462151394, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1787589, Length=120, Percent_Identity=35.8333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=252, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786508, Length=146, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081904, Length=217, Percent_Identity=26.7281105990783, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787128, Length=147, Percent_Identity=29.2517006802721, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=148, Percent_Identity=27.027027027027, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787530, Length=264, Percent_Identity=22.7272727272727, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1788296, Length=229, Percent_Identity=24.4541484716157, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33158; Mature: 33158

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLRQIQAFVLVARLGSFTRAAQAMHLTQSALSLLVREFEGAIESRLFDRTTRAVTLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
VVGSDLFPRAERILADLESAISGVDKLMARERGRVVVAAPLLLSSTYLPPLLAAFFAKYP
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHCC
GIEVVLQDTLPSQVLPLVRGGAADVGIGTFASDEVDVRRTLLFSEAMVAAFPVGHAFSRL
CCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QKLTWADVAQEPVLALSRGSVFRDLTEAGFAAAGLILKPAREANYAGSLIGMVDAGLGVA
HHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCEE
ILPGYAVKLTDPARIGWHRVENPLIDREVSLVQRAGVSLSPAAQGFVDFIVAPQASQHPR
EECCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC
PRRRRPAAS
CCCCCCCCC
>Mature Secondary Structure
MNVTLRQIQAFVLVARLGSFTRAAQAMHLTQSALSLLVREFEGAIESRLFDRTTRAVTLT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
VVGSDLFPRAERILADLESAISGVDKLMARERGRVVVAAPLLLSSTYLPPLLAAFFAKYP
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHHHCC
GIEVVLQDTLPSQVLPLVRGGAADVGIGTFASDEVDVRRTLLFSEAMVAAFPVGHAFSRL
CCEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QKLTWADVAQEPVLALSRGSVFRDLTEAGFAAAGLILKPAREANYAGSLIGMVDAGLGVA
HHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHCCCCEE
ILPGYAVKLTDPARIGWHRVENPLIDREVSLVQRAGVSLSPAAQGFVDFIVAPQASQHPR
EECCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCC
PRRRRPAAS
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]