Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is cyaY
Identifier: 91786681
GI number: 91786681
Start: 800764
End: 801114
Strand: Direct
Name: cyaY
Synonym: Bpro_0779
Alternate gene names: 91786681
Gene position: 800764-801114 (Clockwise)
Preceding gene: 91786680
Following gene: 91786683
Centisome position: 15.4
GC content: 55.84
Gene sequence:
>351_bases ATGACGGACCTTGAATACCAGGACCTGGCCGAGAGCGCGCTCACGGCAATAGAGACTGCCTGCGACCGGATCAATGATGA AACCGACGCTGACATTGACAACCAGCGTACCGGCGGCATGATCACGCTGACATTTTCAAACCGCAGCCAGATCATCATCA ACCTGCAAAAACCGCTGCAGGAAATATGGATGGCCGCCAAGGCGGGTGGTTTCCATTACAAGTTCCGTGGCAATCAATGG CTGGACACCAAGGATTCCAGCGAGTTCTTCACCGGTTTGTCACGTTACGCCAGCGAGCAGGCGGGTCAGCCGCTGGTGTT CAATGCACCTGTTCCGGTGACCGGCAAGTAG
Upstream 100 bases:
>100_bases CAACCACGACGGCAACAAGGCCATGCCTGGAAACAAAAGCCCGAAGGCGGCCTAAAATTTGAAGCCAGGAATGATGTGAA GAAACCATGATGGGATTGTA
Downstream 100 bases:
>100_bases GCCTTCGGGTAGCGAGGAAGGTCGAATCCGCGCCGGTGCCGGCAGCGGGAGTCAACTGTGACGCCGCAATTTTTGTCCGT CAGTTCTTGAACAGATCCAG
Product: frataxin-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 115
Protein sequence:
>116_residues MTDLEYQDLAESALTAIETACDRINDETDADIDNQRTGGMITLTFSNRSQIIINLQKPLQEIWMAAKAGGFHYKFRGNQW LDTKDSSEFFTGLSRYASEQAGQPLVFNAPVPVTGK
Sequences:
>Translated_116_residues MTDLEYQDLAESALTAIETACDRINDETDADIDNQRTGGMITLTFSNRSQIIINLQKPLQEIWMAAKAGGFHYKFRGNQW LDTKDSSEFFTGLSRYASEQAGQPLVFNAPVPVTGK >Mature_115_residues TDLEYQDLAESALTAIETACDRINDETDADIDNQRTGGMITLTFSNRSQIIINLQKPLQEIWMAAKAGGFHYKFRGNQWL DTKDSSEFFTGLSRYASEQAGQPLVFNAPVPVTGK
Specific function: Not Known; Its Knock Out Does Not Affect Cellular Iron Content. [C]
COG id: COG1965
COG function: function code P; Protein implicated in iron transport, frataxin homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the frataxin family
Homologues:
Organism=Escherichia coli, GI1790239, Length=108, Percent_Identity=35.1851851851852, Blast_Score=75, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): CYAY_POLSJ (Q12FF7)
Other databases:
- EMBL: CP000316 - RefSeq: YP_547633.1 - ProteinModelPortal: Q12FF7 - SMR: Q12FF7 - STRING: Q12FF7 - GeneID: 4011161 - GenomeReviews: CP000316_GR - KEGG: pol:Bpro_0779 - NMPDR: fig|296591.1.peg.3155 - eggNOG: COG1965 - HOGENOM: HBG687517 - OMA: GGFHFRR - PhylomeDB: Q12FF7 - ProtClustDB: CLSK951636 - BioCyc: PSP296591:BPRO_0779-MONOMER - HAMAP: MF_00142 - InterPro: IPR002908 - InterPro: IPR020895 - Gene3D: G3DSA:3.30.920.10 - TIGRFAMs: TIGR03421
Pfam domain/function: PF01491 Frataxin_Cyay; SSF55387 Frataxin_like
EC number: NA
Molecular weight: Translated: 12937; Mature: 12805
Theoretical pI: Translated: 4.35; Mature: 4.35
Prosite motif: PS01344 FRATAXIN_1; PS50810 FRATAXIN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLEYQDLAESALTAIETACDRINDETDADIDNQRTGGMITLTFSNRSQIIINLQKPLQ CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHH EIWMAAKAGGFHYKFRGNQWLDTKDSSEFFTGLSRYASEQAGQPLVFNAPVPVTGK HHHHHHCCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC >Mature Secondary Structure TDLEYQDLAESALTAIETACDRINDETDADIDNQRTGGMITLTFSNRSQIIINLQKPLQ CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEHHHHHH EIWMAAKAGGFHYKFRGNQWLDTKDSSEFFTGLSRYASEQAGQPLVFNAPVPVTGK HHHHHHCCCCEEEEECCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA