Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is pdhA [H]
Identifier: 91786664
GI number: 91786664
Start: 782310
End: 783323
Strand: Direct
Name: pdhA [H]
Synonym: Bpro_0762
Alternate gene names: 91786664
Gene position: 782310-783323 (Clockwise)
Preceding gene: 91786663
Following gene: 91786665
Centisome position: 15.04
GC content: 65.78
Gene sequence:
>1014_bases ATGAGTCACCTGCCGGTACCCCCGCCACCGAGTGGCCCGGTGCCTTGGGACAAGGCCTTTGCGCTGGCGGTGCTGGCCGG CATGCTGCGCATCCGCCGCATGGAAGAGAAGTGTGCCCAGCTCTACGGCGAGCAGAAGATCCGCGGCTTTCTGCATCTGT ACATCGGCGAGGAGGCCGTGGCTGTCGGCGCGCTGCGCGCTCTCCAGCCGCAAGACAACGTGGTGGCTACCTACCGCGAG CACGGTCATGCGCTGCTGCGCGGCTTGGCCATGAACGGCATCATGGCCGAAATGTACGGCAAGCGCGAGGGCTGTTCGCG CGGGCGCGGCGGCTCCATGCATTTGTTCGACCGTGCGACCCGTTTTTATGGCGGCAATGCGATTGTGGGTGGTGGCCTGC CATTGGCTGCAGGACTGGCGCTGGCCGACAAAATGGCGGGGCGCCAGGCACTCACCGCCTGTTTTTTTGGTGAGGGTGCG ATCGCCGAGGGGGCCTTTCATGAAGCGGCCAACCTTGCCGCGCTCTGGCAGCTGCCGGTACTGTTTTGCTGCGAGAACAA TCTATATGCCATGGGCACGGCGCTGGCGCGCTCCGAGGCGCAGACCGATCTGTGCATGAAGGCGGCGTCGTACGGCATGG CCACCGTGCAGGCTGACGGCATGGATGTGGTGGCCGTATTTGACGCTGTGCAGCGCAGCGCGCAGCAGGTGCGCAGCCAG GGCCGCCCGGTGTTTGTGGAACTGAAGACCTACCGCTTTCGCGCGCACTCGATGTTCGACCCCGAGCTGTACCGCGACAA GGCCGAGGTGCAAGCCTGGAAGACGCGTGGCCCCATCCACACATTCACCGCGCGCCTGAAGGCGCAGGGCAGCCTGACGG AGGACGAGTTCCTGGTGCTTGATGCGGCGGCGCAGGCAGAGGTCGATGCCGCCGCGGCCTTTGCCGAAGCCGGCACCTGG GAGCCGGTTGAAGACCTGCTGCGCGATGTCCATACACGGGAGGGAGCAGCCTGA
Upstream 100 bases:
>100_bases TATTGCCGCGCACGCGCAGCGGCAAGATCATGCGCCGCCTGCTCAAGGCCCGCGAGCTCGGCCTGCCTGAGGGCGACATC TCGACGCTGGAGGGTGGAGC
Downstream 100 bases:
>100_bases TGGCCCGCCGCACCATCACATACCGGGAAGCCCTGCGTGAAGCGCTGCGCGAAGCCCTGTACGCCGACCCGCGTGTCTTT CTGATGGGCGAGGACGTGGG
Product: pyruvate dehydrogenase (lipoamide)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MSHLPVPPPPSGPVPWDKAFALAVLAGMLRIRRMEEKCAQLYGEQKIRGFLHLYIGEEAVAVGALRALQPQDNVVATYRE HGHALLRGLAMNGIMAEMYGKREGCSRGRGGSMHLFDRATRFYGGNAIVGGGLPLAAGLALADKMAGRQALTACFFGEGA IAEGAFHEAANLAALWQLPVLFCCENNLYAMGTALARSEAQTDLCMKAASYGMATVQADGMDVVAVFDAVQRSAQQVRSQ GRPVFVELKTYRFRAHSMFDPELYRDKAEVQAWKTRGPIHTFTARLKAQGSLTEDEFLVLDAAAQAEVDAAAAFAEAGTW EPVEDLLRDVHTREGAA
Sequences:
>Translated_337_residues MSHLPVPPPPSGPVPWDKAFALAVLAGMLRIRRMEEKCAQLYGEQKIRGFLHLYIGEEAVAVGALRALQPQDNVVATYRE HGHALLRGLAMNGIMAEMYGKREGCSRGRGGSMHLFDRATRFYGGNAIVGGGLPLAAGLALADKMAGRQALTACFFGEGA IAEGAFHEAANLAALWQLPVLFCCENNLYAMGTALARSEAQTDLCMKAASYGMATVQADGMDVVAVFDAVQRSAQQVRSQ GRPVFVELKTYRFRAHSMFDPELYRDKAEVQAWKTRGPIHTFTARLKAQGSLTEDEFLVLDAAAQAEVDAAAAFAEAGTW EPVEDLLRDVHTREGAA >Mature_336_residues SHLPVPPPPSGPVPWDKAFALAVLAGMLRIRRMEEKCAQLYGEQKIRGFLHLYIGEEAVAVGALRALQPQDNVVATYREH GHALLRGLAMNGIMAEMYGKREGCSRGRGGSMHLFDRATRFYGGNAIVGGGLPLAAGLALADKMAGRQALTACFFGEGAI AEGAFHEAANLAALWQLPVLFCCENNLYAMGTALARSEAQTDLCMKAASYGMATVQADGMDVVAVFDAVQRSAQQVRSQG RPVFVELKTYRFRAHSMFDPELYRDKAEVQAWKTRGPIHTFTARLKAQGSLTEDEFLVLDAAAQAEVDAAAAFAEAGTWE PVEDLLRDVHTREGAA
Specific function: The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components:pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydroge
COG id: COG1071
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4885543, Length=330, Percent_Identity=40.3030303030303, Blast_Score=240, Evalue=1e-63, Organism=Homo sapiens, GI4505685, Length=309, Percent_Identity=40.1294498381877, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI291084742, Length=309, Percent_Identity=40.1294498381877, Blast_Score=216, Evalue=2e-56, Organism=Homo sapiens, GI291084744, Length=316, Percent_Identity=39.2405063291139, Blast_Score=209, Evalue=3e-54, Organism=Homo sapiens, GI291084757, Length=301, Percent_Identity=37.5415282392027, Blast_Score=179, Evalue=2e-45, Organism=Homo sapiens, GI11386135, Length=281, Percent_Identity=30.9608540925267, Blast_Score=124, Evalue=1e-28, Organism=Homo sapiens, GI258645172, Length=281, Percent_Identity=31.3167259786477, Blast_Score=123, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17536047, Length=324, Percent_Identity=40.1234567901235, Blast_Score=229, Evalue=1e-60, Organism=Caenorhabditis elegans, GI32564172, Length=324, Percent_Identity=40.1234567901235, Blast_Score=229, Evalue=1e-60, Organism=Caenorhabditis elegans, GI86563357, Length=322, Percent_Identity=31.6770186335404, Blast_Score=149, Evalue=2e-36, Organism=Caenorhabditis elegans, GI86563355, Length=322, Percent_Identity=31.6770186335404, Blast_Score=149, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6321026, Length=311, Percent_Identity=41.1575562700965, Blast_Score=234, Evalue=1e-62, Organism=Drosophila melanogaster, GI24639744, Length=327, Percent_Identity=40.9785932721713, Blast_Score=244, Evalue=9e-65, Organism=Drosophila melanogaster, GI28571106, Length=327, Percent_Identity=40.9785932721713, Blast_Score=244, Evalue=9e-65, Organism=Drosophila melanogaster, GI24639740, Length=327, Percent_Identity=40.9785932721713, Blast_Score=243, Evalue=1e-64, Organism=Drosophila melanogaster, GI24639746, Length=309, Percent_Identity=41.747572815534, Blast_Score=239, Evalue=2e-63, Organism=Drosophila melanogaster, GI24639748, Length=327, Percent_Identity=38.2262996941896, Blast_Score=228, Evalue=4e-60, Organism=Drosophila melanogaster, GI21355903, Length=285, Percent_Identity=28.4210526315789, Blast_Score=119, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001017 - InterPro: IPR017597 [H]
Pfam domain/function: PF00676 E1_dh [H]
EC number: =1.2.4.1 [H]
Molecular weight: Translated: 36460; Mature: 36329
Theoretical pI: Translated: 6.60; Mature: 6.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHLPVPPPPSGPVPWDKAFALAVLAGMLRIRRMEEKCAQLYGEQKIRGFLHLYIGEEAV CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEEEEECCHHH AVGALRALQPQDNVVATYREHGHALLRGLAMNGIMAEMYGKREGCSRGRGGSMHLFDRAT HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHH RFYGGNAIVGGGLPLAAGLALADKMAGRQALTACFFGEGAIAEGAFHEAANLAALWQLPV HHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCE LFCCENNLYAMGTALARSEAQTDLCMKAASYGMATVQADGMDVVAVFDAVQRSAQQVRSQ EEEECCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHC GRPVFVELKTYRFRAHSMFDPELYRDKAEVQAWKTRGPIHTFTARLKAQGSLTEDEFLVL CCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEE DAAAQAEVDAAAAFAEAGTWEPVEDLLRDVHTREGAA ECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure SHLPVPPPPSGPVPWDKAFALAVLAGMLRIRRMEEKCAQLYGEQKIRGFLHLYIGEEAV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEEEEECCHHH AVGALRALQPQDNVVATYREHGHALLRGLAMNGIMAEMYGKREGCSRGRGGSMHLFDRAT HHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHH RFYGGNAIVGGGLPLAAGLALADKMAGRQALTACFFGEGAIAEGAFHEAANLAALWQLPV HHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCE LFCCENNLYAMGTALARSEAQTDLCMKAASYGMATVQADGMDVVAVFDAVQRSAQQVRSQ EEEECCCEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHC GRPVFVELKTYRFRAHSMFDPELYRDKAEVQAWKTRGPIHTFTARLKAQGSLTEDEFLVL CCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEEE DAAAQAEVDAAAAFAEAGTWEPVEDLLRDVHTREGAA ECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA