Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is tal
Identifier: 91786654
GI number: 91786654
Start: 770261
End: 771208
Strand: Direct
Name: tal
Synonym: Bpro_0752
Alternate gene names: 91786654
Gene position: 770261-771208 (Clockwise)
Preceding gene: 91786651
Following gene: 91786655
Centisome position: 14.81
GC content: 63.82
Gene sequence:
>948_bases ATGAATCAGCTCGAATCCCTCAAACAATTCACCACCGTGGTCGCCGACACCGGTGACTTCAGGCAACTGGGCCAGTTCAA GCCGCAGGACGCGACCACCAACCCGTCGCTCATCCTCAAGGCGGTGCAAAAGGCCGACTACCAGCCCCTGCTGAAAGAGA CGGTGGCCCGGTTCAAGGGCCGGGCGCTGGATGAAGTCATGGACCGGCTGCTGGTGCGCTTTGGCTGCGAAATCCTCTCC ATCATTCCCGGACGCGTGTCCACGGAAGTCGATGCCCGCCTGAGCTTTGATGCCAACGCCAGCTATACGCGCGGCGAGCG CATCGTCGAGCTGTACCAGGCCGAAGGCATTCACATTGACCGCGTGCTGATCAAGGTGGCCGCCACCTGGGAGGGCATCC AGGCGGCAGAGCGGCTGGAGCGGCGCGGCATCCATACCAACCTGACGCTGCTGTTTTCGTTCTGCCAGGCGGTGGCCTGC GGCCAGGCCAGGGTGCAGCTGATTTCGCCCTTTGTGGGCCGCATTTACGACTGGTACAAGAAGTCGGCCGGCGCCGCGTG GGACGAAGCCGCCAATGCTGGCGCCAACGACCCCGGCGTGAAGTCGGTACGCCAGATCTACAACCATTACAAGCACTTCG GCATTGCCACCGAGGTCATGGGTGCGAGCTTTCGCAATGCAGGCCAGATCACCGCGCTGGCGGGCTGCGACCTGCTGACC ATCAGCCCAGAACTGCTGGCGCAGCTGGCCGCGTCCGAAGCGCCGCTGGCCCGCTCGCTGGACGCCGGGGCTGCCAGGTC GCTCGACTTGCCCGCCGTGAATTACGACGAAACCGGTTTCCGCTACGCGCTCAACGAAGACGCCATGGCCACCGAAAAGC TGGCCGAAGGCATACGCGCCTTTGCGGCCGATGCGATCAAGCTTGAGCAGCTGATGGTGGCGGCATGA
Upstream 100 bases:
>100_bases CTGCTTTGTAATTTAGTTTCACATTAATTTGGCATAATGGTAACTCAAACGGGCTGTCTTCTGACAGCGCTTTTTATCCC TGCCACCTACACTTTTGGCC
Downstream 100 bases:
>100_bases GTCAGTCCATGAAACGCCTTCGTTGTGATCAGACCCCGGCCTGGGCGGCGCTGCAGGCCAGCTTTGAAGCCGGCGGAAAA TCCTTCGATCTGCGTGAGGC
Product: transaldolase B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MNQLESLKQFTTVVADTGDFRQLGQFKPQDATTNPSLILKAVQKADYQPLLKETVARFKGRALDEVMDRLLVRFGCEILS IIPGRVSTEVDARLSFDANASYTRGERIVELYQAEGIHIDRVLIKVAATWEGIQAAERLERRGIHTNLTLLFSFCQAVAC GQARVQLISPFVGRIYDWYKKSAGAAWDEAANAGANDPGVKSVRQIYNHYKHFGIATEVMGASFRNAGQITALAGCDLLT ISPELLAQLAASEAPLARSLDAGAARSLDLPAVNYDETGFRYALNEDAMATEKLAEGIRAFAADAIKLEQLMVAA
Sequences:
>Translated_315_residues MNQLESLKQFTTVVADTGDFRQLGQFKPQDATTNPSLILKAVQKADYQPLLKETVARFKGRALDEVMDRLLVRFGCEILS IIPGRVSTEVDARLSFDANASYTRGERIVELYQAEGIHIDRVLIKVAATWEGIQAAERLERRGIHTNLTLLFSFCQAVAC GQARVQLISPFVGRIYDWYKKSAGAAWDEAANAGANDPGVKSVRQIYNHYKHFGIATEVMGASFRNAGQITALAGCDLLT ISPELLAQLAASEAPLARSLDAGAARSLDLPAVNYDETGFRYALNEDAMATEKLAEGIRAFAADAIKLEQLMVAA >Mature_315_residues MNQLESLKQFTTVVADTGDFRQLGQFKPQDATTNPSLILKAVQKADYQPLLKETVARFKGRALDEVMDRLLVRFGCEILS IIPGRVSTEVDARLSFDANASYTRGERIVELYQAEGIHIDRVLIKVAATWEGIQAAERLERRGIHTNLTLLFSFCQAVAC GQARVQLISPFVGRIYDWYKKSAGAAWDEAANAGANDPGVKSVRQIYNHYKHFGIATEVMGASFRNAGQITALAGCDLLT ISPELLAQLAASEAPLARSLDAGAARSLDLPAVNYDETGFRYALNEDAMATEKLAEGIRAFAADAIKLEQLMVAA
Specific function: Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
COG id: COG0176
COG function: function code G; Transaldolase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transaldolase family. Type 1 subfamily
Homologues:
Organism=Homo sapiens, GI5803187, Length=317, Percent_Identity=57.4132492113565, Blast_Score=354, Evalue=5e-98, Organism=Escherichia coli, GI1788807, Length=320, Percent_Identity=52.8125, Blast_Score=315, Evalue=2e-87, Organism=Escherichia coli, GI1786189, Length=318, Percent_Identity=53.1446540880503, Blast_Score=314, Evalue=4e-87, Organism=Caenorhabditis elegans, GI25153750, Length=321, Percent_Identity=56.386292834891, Blast_Score=338, Evalue=2e-93, Organism=Caenorhabditis elegans, GI25153752, Length=167, Percent_Identity=57.4850299401198, Blast_Score=187, Evalue=7e-48, Organism=Caenorhabditis elegans, GI17570473, Length=95, Percent_Identity=61.0526315789474, Blast_Score=109, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6323386, Length=321, Percent_Identity=55.1401869158878, Blast_Score=313, Evalue=2e-86, Organism=Saccharomyces cerevisiae, GI6321480, Length=321, Percent_Identity=50.1557632398754, Blast_Score=305, Evalue=5e-84, Organism=Drosophila melanogaster, GI45549185, Length=319, Percent_Identity=54.5454545454545, Blast_Score=343, Evalue=1e-94,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): TAL_POLSJ (Q12FI4)
Other databases:
- EMBL: CP000316 - RefSeq: YP_547606.1 - ProteinModelPortal: Q12FI4 - SMR: Q12FI4 - STRING: Q12FI4 - GeneID: 4011309 - GenomeReviews: CP000316_GR - KEGG: pol:Bpro_0752 - NMPDR: fig|296591.1.peg.1157 - eggNOG: COG0176 - HOGENOM: HBG286747 - OMA: GCEILAI - PhylomeDB: Q12FI4 - ProtClustDB: PRK05269 - BioCyc: PSP296591:BPRO_0752-MONOMER - GO: GO:0005737 - HAMAP: MF_00492 - InterPro: IPR013785 - InterPro: IPR001585 - InterPro: IPR004730 - InterPro: IPR018225 - Gene3D: G3DSA:3.20.20.70 - PANTHER: PTHR10683 - PANTHER: PTHR10683:SF3 - TIGRFAMs: TIGR00874
Pfam domain/function: PF00923 Transaldolase
EC number: =2.2.1.2
Molecular weight: Translated: 34430; Mature: 34430
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: PS01054 TRANSALDOLASE_1; PS00958 TRANSALDOLASE_2
Important sites: ACT_SITE 125-125
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQLESLKQFTTVVADTGDFRQLGQFKPQDATTNPSLILKAVQKADYQPLLKETVARFKG CCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC RALDEVMDRLLVRFGCEILSIIPGRVSTEVDARLSFDANASYTRGERIVELYQAEGIHID CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHH RVLIKVAATWEGIQAAERLERRGIHTNLTLLFSFCQAVACGQARVQLISPFVGRIYDWYK HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSAGAAWDEAANAGANDPGVKSVRQIYNHYKHFGIATEVMGASFRNAGQITALAGCDLLT HHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEE ISPELLAQLAASEAPLARSLDAGAARSLDLPAVNYDETGFRYALNEDAMATEKLAEGIRA ECHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHH FAADAIKLEQLMVAA HHHHHHHHHHHHHCC >Mature Secondary Structure MNQLESLKQFTTVVADTGDFRQLGQFKPQDATTNPSLILKAVQKADYQPLLKETVARFKG CCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCC RALDEVMDRLLVRFGCEILSIIPGRVSTEVDARLSFDANASYTRGERIVELYQAEGIHID CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHH RVLIKVAATWEGIQAAERLERRGIHTNLTLLFSFCQAVACGQARVQLISPFVGRIYDWYK HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSAGAAWDEAANAGANDPGVKSVRQIYNHYKHFGIATEVMGASFRNAGQITALAGCDLLT HHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEE ISPELLAQLAASEAPLARSLDAGAARSLDLPAVNYDETGFRYALNEDAMATEKLAEGIRA ECHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHH FAADAIKLEQLMVAA HHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA