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The map label for this gene is ygeY

Identifier: 91212250

GI number: 91212250

Start: 3187610

End: 3188821

Strand: Direct

Name: ygeY

Synonym: UTI89_C3257

Alternate gene names: 91212250

Gene position: 3187610-3188821 (Clockwise)

Preceding gene: 91212249

Following gene: 91212251

Centisome position: 62.92

GC content: 50.91

Gene sequence:

>1212_bases
ATGGCTAAGAATATTCCATTCAAACTGATTCTTGAAAAAGCAAAAGATTACCAGGCAGACATGACTCGCTTCCTGCGCGA
TATGGTTGCTATTCCCAGTGAAAGCTGCGACGAGAAACGCGTAGTACATCGTATTAAAGAAGAGATGGAAAAAGTCGGCT
TCGATAAAGTTGAAATCGACCCAATGGGCAATGTTCTCGGTTATATCGGCCACGGCCCGCGTCTGGTGGCAATGGACGCT
CATATCGATACAGTCGGCATTGGCAACATCAAAAACTGGGACTTCGATCCGTATGAAGGCATGGAAACCGACGAGCTGAT
CGGTGGTCGTGGTACTTCCGACCAGGAAGGCGGCATGGCGTCTATGGTATATGCCGGAAAAATCATTAAAGATCTCGGTC
TGGAAGATGAATATACCCTGCTGGTCACCGGTACTGTGCAGGAAGAAGACTGCGACGGTCTGTGCTGGCAATACATTATT
GAACAATCCGGCATTCGCCCGGAATTTGTGGTCAGTACCGAACCAACCGACTGCCAGGTATACCGTGGTCAACGCGGTCG
TATGGAAATTCGCATTGATGTTCAGGGTGTTAGCTGCCACGGTTCGGCACCAGAACGTGGTGATAACGCCATTTTCAAAA
TGGGTCCAATTCTTGGCGAATTACAAGAACTCTCCCAACGTCTGGGTTATGACGAATTCCTCGGCAAAGGCACCCTCACC
GTTTCTGAAATTTTCTTCACCTCCCCAAGCCGTTGCGCTGTCGCAGACAGCTGCGCAGTTTCAATCGACCGTCGTCTGAC
CTGGGGCGAAACCTGGGAAGGCGCGCTGGACGAGATCCGCGCCCTGCCTGCAGTACAGAAAGCTAACGCGGTTGTTTCTA
TGTACAACTACGACCGCCCATCCTGGACTGGCCTGGTTTACCCAACCGAATGCTACTTCCCGACCTGGAAAGTGGAAGAA
GATCACTTCACCGTTAAAGCACTGGTGAATGCTTATGAAGGGCTGTTTGGTAAAGCGCCTGTCGTTGATAAGTGGACCTT
CTCAACTAACGGCGTATCCATCATGGGTCGCCACGGCATTCCGGTCATAGGTTTTGGCCCTGGTAAAGAACCGGAAGCGC
ACGCGCCAAACGAAAAAACCTGGAAATCTCACCTGGTAACCTGTGCCGCTATGTACGCTGCAATCCCATTAAGCTGGCTG
GCAACCGAATAA

Upstream 100 bases:

>100_bases
CCGCGAAGTTGTCTGGGAAGGCAAACACGCTGTAGCACCTTAATCACCCTATTGGAACTGCTCCCTGCAAAACGGGGAGT
AAAAAATCTGGAGAAAAATA

Downstream 100 bases:

>100_bases
TTACTCTTCACTTATCCCCCTCCGGTTCGCCGGAGGGTTTTTGGAGTTTGCTATGCGCGTATTGATAAAAAACGGCATTG
TTGTTAATGCAGATGGACAG

Product: peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDA
HIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII
EQSGIRPEFVVSTEPTDCQVYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLT
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEE
DHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWL
ATE

Sequences:

>Translated_403_residues
MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDA
HIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII
EQSGIRPEFVVSTEPTDCQVYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLT
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEE
DHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWL
ATE
>Mature_402_residues
AKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAH
IDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYIIE
QSGIRPEFVVSTEPTDCQVYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLTV
SEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEED
HFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWLA
TE

Specific function: Unknown

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family

Homologues:

Organism=Escherichia coli, GI1789236, Length=403, Percent_Identity=100, Blast_Score=838, Evalue=0.0,
Organism=Escherichia coli, GI1790395, Length=373, Percent_Identity=27.0777479892761, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1788816, Length=385, Percent_Identity=23.1168831168831, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YGEY_ECO57 (P65809)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   A91097
- PIR:   E85942
- RefSeq:   NP_289442.1
- RefSeq:   NP_311772.1
- ProteinModelPortal:   P65809
- SMR:   P65809
- EnsemblBacteria:   EBESCT00000028264
- EnsemblBacteria:   EBESCT00000056184
- GeneID:   916436
- GeneID:   958286
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z4211
- KEGG:   ecs:ECs3745
- GeneTree:   EBGT00050000009680
- HOGENOM:   HBG728841
- OMA:   LIAMDAH
- ProtClustDB:   PRK13004
- BioCyc:   ECOL83334:ECS3745-MONOMER
- GO:   GO:0006508
- InterPro:   IPR001261
- InterPro:   IPR017706
- InterPro:   IPR002933
- InterPro:   IPR011650
- TIGRFAMs:   TIGR03320

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20; SSF55031 Peptidase_M20_dimer

EC number: NA

Molecular weight: Translated: 44804; Mature: 44673

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00758 ARGE_DAPE_CPG2_1; PS00639 THIOL_PROTEASE_HIS

Important sites: ACT_SITE 83-83 ACT_SITE 148-148

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEID
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
PMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMA
CCCCHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEE
SMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYIIEQSGIRPEFVVSTEPTDCQV
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEE
YRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLT
EECCCCCEEEEEEEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCHHHHHCCCCEE
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRP
EEEEEECCCCCCEECCHHHEEECCCCCCCCCHHHHHHHHHHCCCHHHCCEEEEEEECCCC
SWTGLVYPTECYFPTWKVEEDHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGI
CCCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCC
PVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWLATE
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCC
>Mature Secondary Structure 
AKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHRIKEEMEKVGFDKVEID
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
PMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGMETDELIGGRGTSDQEGGMA
CCCCHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEE
SMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYIIEQSGIRPEFVVSTEPTDCQV
HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCEEE
YRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPILGELQELSQRLGYDEFLGKGTLT
EECCCCCEEEEEEEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHCCHHHHHCCCCEE
VSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGALDEIRALPAVQKANAVVSMYNYDRP
EEEEEECCCCCCEECCHHHEEECCCCCCCCCHHHHHHHHHHCCCHHHCCEEEEEEECCCC
SWTGLVYPTECYFPTWKVEEDHFTVKALVNAYEGLFGKAPVVDKWTFSTNGVSIMGRHGI
CCCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEECCCC
PVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMYAAIPLSWLATE
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796